LXL04_024420 | RubberDandelionOmics

Gene overview

LXL04_024420

Reference: OH-1004 Chr: Chr05 Coordinates: 90049736-90052986 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1947 bp · LXL04_024420|LXL04_024420|OH1004|cDNA

ATGATGAACACCAACGAAAACAACAACAATGACGACGAAAAAAACAGTCAAAACAACAACTGGTTGGGTTTCTCTCTTTCACCTCATATGAACACCACCACcacaacaaccacaaccaccGCCACGTCATCAATGGAGGGTAGTAATGCGACTCATCACCCCTGTTCTTCGTCTTCCAACCCCACAACTTATTTCAATCTCCCTTCCCATTTCAACTACCCAAACATCTACTGCCATGGCGTCGACGGTGAAAACGGAAG...

CDS

Download CDS FASTA

1947 bp · LXL04_024420|LXL04_024420|OH1004|CDS

ATGATGAACACCAACGAAAACAACAACAATGACGACGAAAAAAACAGTCAAAACAACAACTGGTTGGGTTTCTCTCTTTCACCTCATATGAACACCACCACCACAACAACCACAACCACCGCCACGTCATCAATGGAGGGTAGTAATGCGACTCATCACCCCTGTTCTTCGTCTTCCAACCCCACAACTTATTTCAATCTCCCTTCCCATTTCAACTACCCAAACATCTACTGCCATGGCGTCGACGGTGAAAACGGAAG...

Protein

Download Protein FASTA

648 aa · LXL04_024420|LXL04_024420|OH1004|PROTEIN

MMNTNENNNNDDEKNSQNNNWLGFSLSPHMNTTTTTTTTTATSSMEGSNATHHPCSSSSNPTTYFNLPSHFNYPNIYCHGVDGENGSGLHSGFPIMPLKSDGSLCLMEVITRSQSHSQGMVVSSNPPKLENFFGGVTMGTPDFDRGEGGGATMALGLDSSTTMYYNQNPEHETLQHNHRHHQHQIQPQPFPDYSGFRALYQTVQQEEEVKHDQNIVADTCNLHLPSIGEDDDITGMKNWISRNYHSGVTTADHGGGGGGY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024420`
TK1151 ID	TkA06G145880
OH-1004 ID	LXL04_024420
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 98.118 / OH-1004 56.327 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024420

Location Chr05:90049736-90052986 (+)

Description Similar to ANT: AP2-like ethylene-responsive transcription factor ANT

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37750`	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'.	No verified direct reference in this release
`At1g72570`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g51190`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g17430`	Transcription factor that, in opposition to HDG1, promotes cell proliferation and morphogenesis via transcriptional activation of meristem and cell proliferation genes, but prevents differentiation, especially during embryogenesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0124700`	Acts as a positive regulator of adventitious (crown) root formation by promoting its initiation.	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.2011 · DOI: 10.1111/j.1365-313x.2011.04610.x

Functional annotation source

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Functional annotation source: OH1004 · LXL04_024420 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007276 gamete generation Biological Process

GO:0007389 pattern specification process Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010449 root meristem growth Biological Process

GO:0010492 maintenance of shoot apical meristem identity Biological Process

KEGG gene cross-reference

ath:AT1G51190

ath:AT1G72570

ath:AT4G37750

dosa:Os07g0124700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.972

Rank 1 · LXL04_024420 · OH-1004

Cytoplasm0.075

Rank 2 · LXL04_024420 · OH-1004

Cell membrane0.029

Rank 3 · LXL04_024420 · OH-1004

Endoplasmic reticulum0.022

Rank 4 · LXL04_024420 · OH-1004

Plastid0.016

Rank 5 · LXL04_024420 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP2332-387 aa

PF00847.27AP2430-481 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024420	`PF00847.27`	AP2	332	387	2.3e-18	66.9
LXL04_024420	`PF00847.27`	AP2	430	481	2.3e-18	66.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38914`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor ANT	43.676%	Swiss-Prot	moderate database homology
`Q1PFE1`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor AIL1	69.880%	Swiss-Prot	weak database homology
`Q5YGP7`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor PLT2	68.482%	Swiss-Prot	weak database homology
`Q6PQQ4`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor BBM	65.891%	Swiss-Prot	weak database homology
`Q84Z02`	Oryza sativa subsp. japonica	AP2-like ethylene-responsive transcription factor CRL5	58.649%	Swiss-Prot	moderate database homology

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