Gene Card
Gene overview
cDNA / CDS / Protein Sequences
885 bp · LXL04_024357|LXL04_024357|OH1004|cDNA
ATGGACGAAATGGCAGCTTACTACCCCCCACCGGCGGGTGGCCACACCACCCAGTATTCATACTACCAacctccaccacctcctccCGGAGCTGCGCAACCTCCACCCGCCGCCGTACCTCATTTACAACACCAGTACCACCAGCCCCCTTTCACTTCTTACGCCCAACCGTTATATACGCCATCGTTTCAAGACGAGGTTCGAACGCTGTTCATTGCTGGACTTCCCGAAGACGTCAAGCCGCGCGAGATATACAATCT...
885 bp · LXL04_024357|LXL04_024357|OH1004|CDS
ATGGACGAAATGGCAGCTTACTACCCCCCACCGGCGGGTGGCCACACCACCCAGTATTCATACTACCAACCTCCACCACCTCCTCCCGGAGCTGCGCAACCTCCACCCGCCGCCGTACCTCATTTACAACACCAGTACCACCAGCCCCCTTTCACTTCTTACGCCCAACCGTTATATACGCCATCGTTTCAAGACGAGGTTCGAACGCTGTTCATTGCTGGACTTCCCGAAGACGTCAAGCCGCGCGAGATATACAATCT...
Protein
Download Protein FASTA294 aa · LXL04_024357|LXL04_024357|OH1004|PROTEIN
MDEMAAYYPPPAGGHTTQYSYYQPPPPPPGAAQPPPAAVPHLQHQYHQPPFTSYAQPLYTPSFQDEVRTLFIAGLPEDVKPREIYNLFREFSGYESCHLRSPSATQTQPFGFAVFVDQPSALAALHTLNGMVFDLENGSTLHIDLAKSNSRSKRSRDDERHGSDKRAKVSSSSSSYPRGISDPVMEALKVELKTLQDRNSSAPPCPTIFVANLGPACTEQELNQVFSRSRGFLKLKMQSTYGTPVAFVDFEDTACSSEAL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024357 |
|---|---|
| TK1151 ID | TkA06G152860 |
| OH-1004 ID | LXL04_024357 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 87.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024357 |
|---|---|
| Location | Chr05:88422058-88424506 (-) |
| Description | Similar to Rbpms2: RNA-binding protein with multiple splicing 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0046660 female sex differentiation Biological Process GO:0048661 positive regulation of smooth muscle cell proliferation Biological Process GO:0060047 heart contraction Biological Process GO:0060395 SMAD protein signal transduction Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0003713 transcription coactivator activity Molecular Function GO:0003729 mRNA binding Molecular Function GO:0042802 identical protein binding Molecular Function |
| KEGG gene cross-reference | dre:436682 gga:395678 hsa:348093 mmu:71973 rno:503214 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00076.29RRM_170-134 aaPF00076.29RRM_1208-270 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024357 | PF00076.29 | RRM_1 | 70 | 134 | 7.1e-22 | 77.8 |
| LXL04_024357 | PF00076.29 | RRM_1 | 208 | 270 | 7.1e-22 | 77.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.