LXL04_024242 | RubberDandelionOmics

Gene overview

LXL04_024242

Reference: OH-1004 Chr: Chr05 Coordinates: 85603309-85603967 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

564 bp · LXL04_024242|LXL04_024242|OH1004|cDNA

ATGATTCAAGAGAAATTAATGTATTACTTATCGGAGCACCCATCGATTGTTAATTTCAGATGGAATCATACGCAATCATGGGGGTCCACCTGGTCGTTCCTCTTCACCTCCATCTCCGCGTACGTCTTTCTCGCCCTCCTCCTTAATCTACTTCTTTTCAACCGCCGACGTCCGGTTCCTCTCGGCCCTATCCcggccattcacgccctttcCATGGCTCTCATCTCCGCCACCATCTTCACTGGCATCCTCTTCTCCGC...

CDS

Download CDS FASTA

564 bp · LXL04_024242|LXL04_024242|OH1004|CDS

ATGATTCAAGAGAAATTAATGTATTACTTATCGGAGCACCCATCGATTGTTAATTTCAGATGGAATCATACGCAATCATGGGGGTCCACCTGGTCGTTCCTCTTCACCTCCATCTCCGCGTACGTCTTTCTCGCCCTCCTCCTTAATCTACTTCTTTTCAACCGCCGACGTCCGGTTCCTCTCGGCCCTATCCCGGCCATTCACGCCCTTTCCATGGCTCTCATCTCCGCCACCATCTTCACTGGCATCCTCTTCTCCGC...

Protein

Download Protein FASTA

187 aa · LXL04_024242|LXL04_024242|OH1004|PROTEIN

MIQEKLMYYLSEHPSIVNFRWNHTQSWGSTWSFLFTSISAYVFLALLLNLLLFNRRRPVPLGPIPAIHALSMALISATIFTGILFSAAAEIRDTRWFWRRNKTTAFQWLLCFPLGTRPSGRVFFWSYIFYLTRFLHTLRTFIAILRRRNLSFFRLFNHSILIILDGDRTPECVLPVRNQLSDVTARV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024242`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024242

Location Chr05:85603309-85603967 (-)

Description Similar to HOS3: Elongation of fatty acids protein 3-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36830`	Probable very long-chain fatty acid (VLCFA) elongase that controls VLCFA composition and functions to inhibit abscisic acid (ABA)-mediated stress responses, including regulation of stomatal aperture, maintenance of primary root growth and inhibition of germination.	HOS3, an ELO-like gene, inhibits effects of ABA and implicates a S-1-P/ceramide control system for abiotic stress responses in Arabidopsis thaliana.2009 · DOI: 10.1093/mp/ssn085

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024242 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0019367 fatty acid elongation, saturated fatty acid Biological Process

GO:0030148 sphingolipid biosynthetic process Biological Process

GO:0030497 fatty acid elongation Biological Process

GO:0034625 fatty acid elongation, monounsaturated fatty acid Biological Process

GO:0034626 fatty acid elongation, polyunsaturated fatty acid Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0009922 fatty acid elongase activity Molecular Function

KEGG gene cross-reference

ath:AT4G36830

ddi:DDB_G0272012

ddi:DDB_G0274669

ddi:DDB_G0281821

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.723

Rank 1 · LXL04_024242 · OH-1004

Nucleus0.123

Rank 2 · LXL04_024242 · OH-1004

Cytoplasm0.079

Rank 3 · LXL04_024242 · OH-1004

Mitochondrion0.059

Rank 4 · LXL04_024242 · OH-1004

Golgi apparatus0.045

Rank 5 · LXL04_024242 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01151.24ELO28-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024242	`PF01151.24`	ELO	28	163	1.1e-20	74.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SYY4`	Arabidopsis thaliana	Fatty acid elongase 3-like	65.432%	Swiss-Prot	strong database homology

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