LXL04_024229 | RubberDandelionOmics

Gene overview

LXL04_024229

Reference: OH-1004 Chr: Chr05 Coordinates: 85246794-85252438 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1833 bp · LXL04_024229|LXL04_024229|OH1004|cDNA

atGGGAAATTTGAATGATATGTCCCTAGAAATGGCAGCCTTTCCTGTTCAATTACACAGCGGATTCTTTGGCAGTTGTCAAATGTCGAGGCTTCGTGTtatgcacaccaagtgttcgatgaaatgcaAAATTCTTTCTTCTTCAGTGTCCAATCTATGCCACGGTTCACATTCATTTCCTCTAGTAAATTCCAAATCTCAAAGGAGGTTGCTATCTATTAGGTCCGTGATTACCGCAAACGGAAAAAAAGAAAACCATCC...

CDS

Download CDS FASTA

1833 bp · LXL04_024229|LXL04_024229|OH1004|CDS

ATGGGAAATTTGAATGATATGTCCCTAGAAATGGCAGCCTTTCCTGTTCAATTACACAGCGGATTCTTTGGCAGTTGTCAAATGTCGAGGCTTCGTGTTATGCACACCAAGTGTTCGATGAAATGCAAAATTCTTTCTTCTTCAGTGTCCAATCTATGCCACGGTTCACATTCATTTCCTCTAGTAAATTCCAAATCTCAAAGGAGGTTGCTATCTATTAGGTCCGTGATTACCGCAAACGGAAAAAAAGAAAACCATCC...

Protein

Download Protein FASTA

610 aa · LXL04_024229|LXL04_024229|OH1004|PROTEIN

MGNLNDMSLEMAAFPVQLHSGFFGSCQMSRLRVMHTKCSMKCKILSSSVSNLCHGSHSFPLVNSKSQRRLLSIRSVITANGKKENHPTNREPNFLRKGFKLRLQPRLRLLSSRLKKTSIRSMLNNLGTYLRKNFKKVTLSASISVVLGLCYLFLKLTAMPTPKVVPYSDLITNLQSGSVLKVLFEEGSRKIYYNTGSIDVENNNDPQIKIAEMNDDDENSIKSVDITTPTVLRKVTRTKKSIPEWQYSTRKIDHDESYLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024229`
TK1151 ID	TkA06G162510
OH-1004 ID	LXL04_024229
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024229

Location Chr05:85246794-85252438 (+)

Description Similar to FTSHI3: Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02450`	Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024229 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0004176 ATP-dependent peptidase activity Molecular Function

GO:0004222 metalloendopeptidase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

amr:AM1_D0237

ath:AT3G02450

sti:Sthe_2649

tro:trd_A0442

ttr:Tter_0172

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.938

Rank 1 · LXL04_024229 · OH-1004

Mitochondrion0.058

Rank 2 · LXL04_024229 · OH-1004

Nucleus0.033

Rank 3 · LXL04_024229 · OH-1004

Cytoplasm0.021

Rank 4 · LXL04_024229 · OH-1004

Cell membrane0.014

Rank 5 · LXL04_024229 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06480.21FtsH_ext145-275 aa

PF07728.21AAA_5361-478 aa

PF00004.36AAA362-491 aa

PF17862.8AAA_lid_3522-560 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024229	`PF06480.21`	FtsH_ext	145	275	1.1e-07	32.7
LXL04_024229	`PF07728.21`	AAA_5	361	478	1.8e-06	28.7
LXL04_024229	`PF00004.36`	AAA	362	491	1.6e-46	158.7
LXL04_024229	`PF17862.8`	AAA_lid_3	522	560	4.6e-12	46.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M895`	Arabidopsis thaliana	Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic	70.221%	Swiss-Prot	strong database homology

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