LXL04_024213 | RubberDandelionOmics

Gene overview

LXL04_024213

Reference: OH-1004 Chr: Chr05 Coordinates: 84673886-84684020 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1128 bp · LXL04_024213|LXL04_024213|OH1004|cDNA

ATGTGGTTCTCTATAGATGATAATGGAAAGTATCAAGAGATGATATCTGCAATGAAGTTTATGCATCTAGGTCCAAACAAATATGAAGTGATCGCCTTACGTGAATCTAGTCCAACATGTAGATTCCCAATGGTAGCAAAGATTTTTGATGCTTCAAAGCTTAATATGCAAGTGAAGATTACAACACAATTTCTATCATCTGGTGTGACATATGCAGCTTACCTCCGATGCAAACACAAGTATTCTGCTGACTATCCGGT...

CDS

Download CDS FASTA

1128 bp · LXL04_024213|LXL04_024213|OH1004|CDS

ATGTGGTTCTCTATAGATGATAATGGAAAGTATCAAGAGATGATATCTGCAATGAAGTTTATGCATCTAGGTCCAAACAAATATGAAGTGATCGCCTTACGTGAATCTAGTCCAACATGTAGATTCCCAATGGTAGCAAAGATTTTTGATGCTTCAAAGCTTAATATGCAAGTGAAGATTACAACACAATTTCTATCATCTGGTGTGACATATGCAGCTTACCTCCGATGCAAACACAAGTATTCTGCTGACTATCCGGT...

Protein

Download Protein FASTA

375 aa · LXL04_024213|LXL04_024213|OH1004|PROTEIN

MWFSIDDNGKYQEMISAMKFMHLGPNKYEVIALRESSPTCRFPMVAKIFDASKLNMQVKITTQFLSSGVTYAAYLRCKHKYSADYPVIRSLKYRLNNHNRSYKSYCGDYKDGWRMLELFQTTSNKRSIEFNVLLQGFCLANFLGDDEVIVEGIVFLPIQKFDEEITKDHDVENLPTTEIECRLPNDYKQYVYSGKNMVKRVQSYFIVETKEEAFSVLTRGVHMKTKCDLDVPAWFSYNNLSGLVPGTGQFSYFNYTSFLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024213`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024213

Location Chr05:84673886-84684020 (+)

Description Similar to BAM1: Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65700`	LRR-rich receptor-like kinase (LRR-RLK) that, similarly to CLV1 and BAM3, participates in the detection of the CLAVATA-family peptides (e.g. CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and of PBL34, PBL35 and PBL36.	No verified direct reference in this release
`At3g49670`	LRR-rich receptor-like kinase (LRR-RLK) implicated in the detection of the CLAVATA-family peptides (CLEs), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and, probably, of PBL34, PBL35 and PBL36.	No verified direct reference in this release
`At1g75820`	LRR-rich receptor-like kinase (LRR-RLK) that, similarly to BAM1 and BAM3, participates in the detection of CLAVATA-family peptides (e.g. CLV3, CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and of PBL34, PBL35 and PBL36.	Stem cell signaling in Arabidopsis requires CRN to localize CLV2 to the plasma membrane.2010 · DOI: 10.1104/pp.109.149930 Receptor-like cytoplasmic kinase MAZZA mediates developmental processes with CLAVATA1 family receptors in Arabidopsis.2021 · DOI: 10.1093/jxb/erab183 A CLE-BAM-CIK signalling module controls root protophloem differentiation in Arabidopsis.2022 · DOI: 10.1111/nph.17791 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024213 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007172 signal complex assembly Biological Process

GO:0009755 hormone-mediated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0010075 regulation of meristem growth Biological Process

GO:0030154 cell differentiation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0036289 peptidyl-serine autophosphorylation Biological Process

GO:0048229 gametophyte development Biological Process

GO:0048437 floral organ development Biological Process

GO:2000037 regulation of stomatal complex patterning Biological Process

GO:0000325 plant-type vacuole Cellular Component

KEGG gene cross-reference

ath:AT1G75820

ath:AT3G49670

ath:AT5G65700

mtr:11439632

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.444

Rank 1 · LXL04_024213 · OH-1004

Endoplasmic reticulum0.220

Rank 2 · LXL04_024213 · OH-1004

Cytoplasm0.193

Rank 3 · LXL04_024213 · OH-1004

Nucleus0.164

Rank 4 · LXL04_024213 · OH-1004

Lysosome / Vacuole0.091

Rank 5 · LXL04_024213 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14299.14PP237-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024213	`PF14299.14`	PP2	37	133	3.4e-06	27.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49545`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	75.000%	Swiss-Prot	weak database homology
`Q9M2Z1`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2	68.345%	Swiss-Prot	weak database homology
`Q9SYQ8`	Arabidopsis thaliana	Receptor protein kinase CLAVATA1	45.455%	Swiss-Prot	weak database homology

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