LXL04_024180 | RubberDandelionOmics

Gene overview

LXL04_024180

Reference: OH-1004 Chr: Chr05 Coordinates: 83500856-83502194 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

984 bp · LXL04_024180|LXL04_024180|OH1004|cDNA

ATGAAGAGTACAGCGTCCAAAAGAGAAGAGCACCTTAAAATCACCAATGGCGGCATTAACTCAAGCACAATTACAACTTCCGACATGAACAATTTGGTGCCAAAATCAAAAACATACTCCGATATTATCAAGGGTAAGATGATCTCAAAAGAAGAGGAATACACAAAAATCACAAATGGTGATACTGCAAGCTATGAATTAACACGAAAGAGACAAAGGCAAAAAGCAAAACACAAAAAAAGTAATCTTTTTGAAAAACT...

CDS

Download CDS FASTA

984 bp · LXL04_024180|LXL04_024180|OH1004|CDS

ATGAAGAGTACAGCGTCCAAAAGAGAAGAGCACCTTAAAATCACCAATGGCGGCATTAACTCAAGCACAATTACAACTTCCGACATGAACAATTTGGTGCCAAAATCAAAAACATACTCCGATATTATCAAGGGTAAGATGATCTCAAAAGAAGAGGAATACACAAAAATCACAAATGGTGATACTGCAAGCTATGAATTAACACGAAAGAGACAAAGGCAAAAAGCAAAACACAAAAAAAGTAATCTTTTTGAAAAACT...

Protein

Download Protein FASTA

327 aa · LXL04_024180|LXL04_024180|OH1004|PROTEIN

MKSTASKREEHLKITNGGINSSTITTSDMNNLVPKSKTYSDIIKGKMISKEEEYTKITNGDTASYELTRKRQRQKAKHKKSNLFEKLTIGSMEILIDYSYNNGVQIMRTHVARSRKKLLILDVNGLLADIILPPPKDCKSDKIILKRAIFKRPFLDDFLRFCFQRFDVAIWSSRTRKVLAPVVDYLLGDLKKKLLFIWDSSHCTNSSARCLENWYKFIVFKDLKKIWEKSEFYDESNTLLLDDSPYKALLNPKHTGVFPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024180`
TK1151 ID	TkA06G168690
OH-1004 ID	LXL04_024180
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	94.800
Protein coverage (%)	TK1151 97.436 / OH-1004 58.410 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_024180`
Location	Chr05:83500856-83502194 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024180` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0023052 signaling Biological Process GO:0090364 regulation of proteasome assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0004721 phosphoprotein phosphatase activity Molecular Function GO:0004722 protein serine/threonine phosphatase activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:1904855 proteasome regulatory particle binding Molecular Function
KEGG gene cross-reference	gga:416237 spo:2541320 xla:447721 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.676

Rank 1 · LXL04_024180 · OH-1004

Cytoplasm0.334

Rank 2 · LXL04_024180 · OH-1004

Cell membrane0.071

Rank 3 · LXL04_024180 · OH-1004

Endoplasmic reticulum0.042

Rank 4 · LXL04_024180 · OH-1004

Mitochondrion0.020

Rank 5 · LXL04_024180 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03031.25NIF117-286 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024180	`PF03031.25`	NIF	117	286	2.6e-19	70.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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