Gene Card
Gene overview
cDNA / CDS / Protein Sequences
372 bp · LXL04_024087|LXL04_024087|OH1004|cDNA
ATGTCGAAAACACATTCAAATGACGACACACATGAGTTACCCATCGTTACAATCGAAACACCAGAAAATCAACACCTTAAAGTCTCTACATTATCTCAAACTCATTACCCTCCCGGTTTTTTCCGAAAGgTGGTAGCTGAGGTGGTTGCTACCTTCTTATTGGTGTTTGTGACATGTGGTTCGGCGGCACTTGCCACCACAAGCAATGAACAAAAGGTGTCTCAACTTGGAGCCTCGCTTGCTGGTGGCCTCATTGTGAC...
372 bp · LXL04_024087|LXL04_024087|OH1004|CDS
ATGTCGAAAACACATTCAAATGACGACACACATGAGTTACCCATCGTTACAATCGAAACACCAGAAAATCAACACCTTAAAGTCTCTACATTATCTCAAACTCATTACCCTCCCGGTTTTTTCCGAAAGGTGGTAGCTGAGGTGGTTGCTACCTTCTTATTGGTGTTTGTGACATGTGGTTCGGCGGCACTTGCCACCACAAGCAATGAACAAAAGGTGTCTCAACTTGGAGCCTCGCTTGCTGGTGGCCTCATTGTGAC...
Protein
Download Protein FASTA123 aa · LXL04_024087|LXL04_024087|OH1004|PROTEIN
MSKTHSNDDTHELPIVTIETPENQHLKVSTLSQTHYPPGFFRKVVAEVVATFLLVFVTCGSAALATTSNEQKVSQLGASLAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVVGHFRWNQVCKP
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024087 |
|---|---|
| TK1151 ID | TkA06G176050 |
| OH-1004 ID | LXL04_024087 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024087 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:80760031-80760512 (-) | |||||||||
| Description | Similar to NIP2-1: Aquaporin NIP2-1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0015708 silicic acid import across plasma membrane Biological Process GO:0015840 urea transport Biological Process GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0048226 Casparian strip Cellular Component GO:0015115 silicate transmembrane transporter activity Molecular Function GO:0015267 channel activity Molecular Function | |||||||||
| KEGG gene cross-reference | dosa:Os02g0745100 dosa:Os06g0228200 zma:541884 zma:542497 zma:542643 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00230.26MIP39-120 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024087 | PF00230.26 | MIP | 39 | 120 | 2.1e-21 | 77.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.