LXL04_024083 | RubberDandelionOmics

Gene overview

LXL04_024083

Reference: OH-1004 Chr: Chr05 Coordinates: 80589971-80591011 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · LXL04_024083|LXL04_024083|OH1004|cDNA

ATGGAAATCCCAACTCCACCACCACCCTCCACAACCACGGTTGCCGCGGCGGCCACCGTTAAAACGCCCGATCCAGATTCAGAGCCACCGCAATCgaacaacatcataaaacagCTCCCACCACCGTTGACCAACGGTGTTCTCAAACGACACAAACCCTTCCACCACCTCCAGCCACCACCAGTGGTGGTCACTTACAAAGAATGTCTCAAGAACCACGCTGCTGCCATGGGTGGCCACGCCATAGATGGGTGTGGGGA...

CDS

Download CDS FASTA

1041 bp · LXL04_024083|LXL04_024083|OH1004|CDS

ATGGAAATCCCAACTCCACCACCACCCTCCACAACCACGGTTGCCGCGGCGGCCACCGTTAAAACGCCCGATCCAGATTCAGAGCCACCGCAATCGAACAACATCATAAAACAGCTCCCACCACCGTTGACCAACGGTGTTCTCAAACGACACAAACCCTTCCACCACCTCCAGCCACCACCAGTGGTGGTCACTTACAAAGAATGTCTCAAGAACCACGCTGCTGCCATGGGTGGCCACGCCATAGATGGGTGTGGGGA...

Protein

Download Protein FASTA

346 aa · LXL04_024083|LXL04_024083|OH1004|PROTEIN

MEIPTPPPPSTTTVAAAATVKTPDPDSEPPQSNNIIKQLPPPLTNGVLKRHKPFHHLQPPPVVVTYKECLKNHAAAMGGHAIDGCGEFMPSPTSSPSYPTSLKCAACGCHRNFHRREPDESLFPSPNNPPIQHVIEYQPHHRHHPPPPQPIPPPAAGANSSSPGNSPSPPPISSSYYPSAPHMLLALSAGLSAPPTENNHGNHNPSIPTTPGSAVPTGSNPNGKKRFRTKFTQDQKEKMHEIAERVGWKMQKRDEELIIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024083`
TK1151 ID	TkA06G175430
OH-1004 ID	LXL04_024083
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	75.200
Protein coverage (%)	TK1151 100.000 / OH-1004 78.035 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024083

Location Chr05:80589971-80591011 (+)

Description Similar to ZHD8: Zinc-finger homeodomain protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15210`	Putative transcription factor.	No verified direct reference in this release
`At3g28920`	Putative transcription factor.	No verified direct reference in this release
`At1g69600`	Transcription factor involved in the up-regulation of several stress-inducible genes.	Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2006.02932.x
`At5g39760`	Putative transcription factor.	ATHB23, an Arabidopsis class I homeodomain-leucine zipper gene, is expressed in the adaxial region of young leaves.2007 · DOI: 10.1007/s00299-007-0340-9

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0414600`	Putative transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024083 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001173 DNA-templated transcriptional start site selection Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009637 response to blue light Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G69600

ath:AT3G28920

ath:AT5G15210

ath:AT5G39760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_024083 · OH-1004

Cytoplasm0.082

Rank 2 · LXL04_024083 · OH-1004

Cell membrane0.027

Rank 3 · LXL04_024083 · OH-1004

Endoplasmic reticulum0.016

Rank 4 · LXL04_024083 · OH-1004

Plastid0.009

Rank 5 · LXL04_024083 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04770.18ZF-HD_dimer64-118 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024083	`PF04770.18`	ZF-HD_dimer	64	118	6.9e-29	100.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXG0`	Arabidopsis thaliana	Zinc-finger homeodomain protein 8	47.253%	Swiss-Prot	moderate database homology
`Q9LHF0`	Arabidopsis thaliana	Zinc-finger homeodomain protein 9	52.768%	Swiss-Prot	strong database homology
`Q9SEZ1`	Arabidopsis thaliana	Zinc-finger homeodomain protein 11	43.882%	Swiss-Prot	moderate database homology
`Q9FIW9`	Arabidopsis thaliana	Zinc-finger homeodomain protein 10	51.685%	Swiss-Prot	strong database homology
`Q6ER21`	Oryza sativa subsp. japonica	Zinc-finger homeodomain protein 9	46.186%	Swiss-Prot	moderate database homology

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