Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2344 bp · LXL04_024062|LXL04_024062|OH1004|cDNA
GGATGAGCAGGAGGCCTGAACCGGCCGGAACCGAGTGTAGAACCGCGACCGAAAAATCGACATGTATAGACCTAAAAACCAAACCGCCAGTTAGAGCCGGTGCCGTACCAGTtccggtgccggtgccgGTCTTTGCGTTGCTACTTTACGTGTTGCTTCATCAGGAACACCCATTTTTCTCTGCTCTTATGACTAGCTCCCACTTTGAAATTGGCGAAACTTCACGCCCGAATGTGGCCTCTGGCCGCAGTCGCCGTTCC...
2238 bp · LXL04_024062|LXL04_024062|OH1004|CDS
ATGAGCAGGAGGCCTGAACCGGCCGGAACCGAGTGTAGAACCGCGACCGAAAAATCGACATGTATAGACCTAAAAACCAAACCGCCAGTTAGAGCCGGTGCCGTACCAGTTCCGGTGCCGGTGCCGGTCTTTGCGTTGCTACTTTACGTGTTGCTTCATCAGGAACACCCATTTTTCTCTGCTCTTATGACTAGCTCCCACTTTGAAATTGGCGAAACTTCACGCCCGAATGTGGCCTCTGGCCGCAGTCGCCGTTCCCG...
Protein
Download Protein FASTA745 aa · LXL04_024062|LXL04_024062|OH1004|PROTEIN
MSRRPEPAGTECRTATEKSTCIDLKTKPPVRAGAVPVPVPVPVFALLLYVLLHQEHPFFSALMTSSHFEIGETSRPNVASGRSRRSRRSGYVSPIPVSVSIRSVSRSHPSASSSTVTSSPETASAHASSSQPSACNLGHAPVPSFVSVPSRVRLPAYDDCGDCTCTCNVKWPEIQRLLPSIIEATIATRTTAANVAYIPRMAFIHKSPDLPFTFSRKQFPIKVCYAMTINKSQGQSLDRVGVYLPQPVFSHGQLYVALSR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024062 |
|---|---|
| TK1151 ID | TkA06G181930 |
| OH-1004 ID | LXL04_024062 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 81.742 / OH-1004 39.060Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024062 |
|---|---|
| Location | Chr05:79371235-79379006 (-) |
| Description | Similar to pfh1: ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000723 telomere maintenance Biological Process GO:0001117 protein-DNA-RNA complex disassembly Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0031297 replication fork processing Biological Process GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process GO:0043504 mitochondrial DNA repair Biological Process GO:0071932 replication fork reversal Biological Process GO:0097046 replication fork progression beyond termination site Biological Process GO:1902983 DNA strand elongation involved in mitotic DNA replication Biological Process GO:1903469 removal of RNA primer involved in mitotic DNA replication Biological Process |
| KEGG gene cross-reference | cje:Cj0945c rno:367645 sce:YHR031C spo:2541213 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02689.21Herpes_Helicase222-269 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024062 | PF02689.21 | Herpes_Helicase | 222 | 269 | 6.2e-07 | 28.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.