LXL04_023992 | RubberDandelionOmics

Gene overview

LXL04_023992

Reference: OH-1004 Chr: Chr05 Coordinates: 77029860-77033670 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1656 bp · LXL04_023992|LXL04_023992|OH1004|cDNA

ATGGATTATAGAAAGCTATTAGCTTTTATATGGTTAACTGGTTTGATTATTAAAACCGTGTCCTCTCAGTTTGCTTCAACTCACTGTCCTCTCGAATTCCAAAACCTAACCACCGTACAAAATTGTGAAGAAGGAACGTGGGATGATTTTTTGCGAGATAAATGCTGTAAACCGCCGTTTAATTCGTACCTCGATGCACTGGCGTTACGTGCAAATCAGACCGGAAAAATCTACCTAAATTCGACAGAACAGACGAGCTG...

CDS

Download CDS FASTA

1656 bp · LXL04_023992|LXL04_023992|OH1004|CDS

ATGGATTATAGAAAGCTATTAGCTTTTATATGGTTAACTGGTTTGATTATTAAAACCGTGTCCTCTCAGTTTGCTTCAACTCACTGTCCTCTCGAATTCCAAAACCTAACCACCGTACAAAATTGTGAAGAAGGAACGTGGGATGATTTTTTGCGAGATAAATGCTGTAAACCGCCGTTTAATTCGTACCTCGATGCACTGGCGTTACGTGCAAATCAGACCGGAAAAATCTACCTAAATTCGACAGAACAGACGAGCTG...

Protein

Download Protein FASTA

551 aa · LXL04_023992|LXL04_023992|OH1004|PROTEIN

MDYRKLLAFIWLTGLIIKTVSSQFASTHCPLEFQNLTTVQNCEEGTWDDFLRDKCCKPPFNSYLDALALRANQTGKIYLNSTEQTSCLKKMKDNVIDVFTCGIEKLTIGINGCSAFSVEDVFNRLRDDVAGLSTACGSLDGVGGYDNRSCEECVKSWQEIKGVITGDSDADLCRFAVLTTLTGSRIDDLIWNQNVYRCLGGQVNNNDSTIIGLLSGISALVVVCVYIMARRWHRLHAGAKDEGMKRDLPKKSRYLKVPVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023992`
TK1151 ID	TkA06G190520
OH-1004 ID	LXL04_023992
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_023992

Location Chr05:77029860-77033670 (+)

Description Similar to At1g30570: Probable receptor-like protein kinase At1g30570

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30570`	Probable receptor-like protein kinase At1g30570.	No verified direct reference in this release
`At2g14440`	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440.	No verified direct reference in this release
`At2g39360`	Probable receptor-like protein kinase At2g39360.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g18500`	Probable receptor-like protein kinase At5g18500.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023992 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G30570

ath:AT2G39360

ath:AT3G46290

ath:AT5G18500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.852

Rank 1 · LXL04_023992 · OH-1004

Endoplasmic reticulum0.090

Rank 2 · LXL04_023992 · OH-1004

Cytoplasm0.078

Rank 3 · LXL04_023992 · OH-1004

Nucleus0.045

Rank 4 · LXL04_023992 · OH-1004

Lysosome / Vacuole0.034

Rank 5 · LXL04_023992 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19160.6SPARK26-161 aa

PF07714.24PK_Tyr_Ser-Thr271-485 aa

PF00069.32Pkinase272-530 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023992	`PF19160.6`	SPARK	26	161	8.1e-10	40.0
LXL04_023992	`PF07714.24`	PK_Tyr_Ser-Thr	271	485	3.5e-39	135.4
LXL04_023992	`PF00069.32`	Pkinase	272	530	8.3e-40	137.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SA72`	Arabidopsis thaliana	Probable receptor-like protein kinase At1g30570	43.643%	Swiss-Prot	moderate database homology
`Q9ZQQ7`	Arabidopsis thaliana	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440	40.483%	Swiss-Prot	moderate database homology
`O80623`	Arabidopsis thaliana	Probable receptor-like protein kinase At2g39360	37.255%	Swiss-Prot	moderate database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	40.067%	Swiss-Prot	moderate database homology
`Q8LEB6`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g18500	40.203%	Swiss-Prot	moderate database homology

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