LXL04_023953 | RubberDandelionOmics

Gene overview

LXL04_023953

Reference: OH-1004 Chr: Chr05 Coordinates: 75479268-75481983 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2303 bp · LXL04_023953|LXL04_023953|OH1004|cDNA

TCTAAATGGCACCTGTATTATCCAAAACCGAACCCCTGTCAGATGGTGTTCACCGTCCGCCTACGGTGACATTAGTTGGATCAAATCTCATGGTCAACGATCATCTTATCTTATCCGATGTCCCATCGAATATTACATCTTGTAATTCATCTTCAAATGGTTGTTTTGTTGGCTTTGATGCTCCCGACTCAAGAAGCCGACACGTGGTTCCAATCGGGAAGCTTAGTGGCATTCGATTCATGAGTATATTTCGGTTCAAA...

CDS

Download CDS FASTA

2298 bp · LXL04_023953|LXL04_023953|OH1004|CDS

ATGGCACCTGTATTATCCAAAACCGAACCCCTGTCAGATGGTGTTCACCGTCCGCCTACGGTGACATTAGTTGGATCAAATCTCATGGTCAACGATCATCTTATCTTATCCGATGTCCCATCGAATATTACATCTTGTAATTCATCTTCAAATGGTTGTTTTGTTGGCTTTGATGCTCCCGACTCAAGAAGCCGACACGTGGTTCCAATCGGGAAGCTTAGTGGCATTCGATTCATGAGTATATTTCGGTTCAAAGTGTG...

Protein

Download Protein FASTA

765 aa · LXL04_023953|LXL04_023953|OH1004|PROTEIN

MAPVLSKTEPLSDGVHRPPTVTLVGSNLMVNDHLILSDVPSNITSCNSSSNGCFVGFDAPDSRSRHVVPIGKLSGIRFMSIFRFKVWWSTHWVGSNGRDLEHETQMVMLEKSDSGRPYVLILPLLEGPFRASFQPGKDDFMDVCVESGSTKVCDTSFKSVIYIQADYDPYILVKKAMRVVQEHLGTFKLLEEKTPPGIIDKFGWCTWDAFYLTVHPQGVFDGVKGLVEGGCPPGLVLLDDGWQSISHDDDQIDSEGMNRT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023953`
TK1151 ID	TkA01G468960
OH-1004 ID	LXL04_023953
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023953

Location Chr05:75479268-75481983 (-)

Description Similar to RFS: Galactinol--sucrose galactosyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40390`	Transglycosidase operating by a ping-pong reaction mechanism.	No verified direct reference in this release
`At5g20250`	Transglycosidase operating by a ping-pong reaction mechanism.	No verified direct reference in this release
`At3g57520`	Transglycosidase operating by a ping-pong reaction mechanism.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0170000`	Transglycosidase operating by a ping-pong reaction mechanism.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023953 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0034484 raffinose catabolic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0016757 glycosyltransferase activity Molecular Function

GO:0047274 galactinol-sucrose galactosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G57520

ath:AT5G20250

ath:AT5G40390

dosa:Os01g0170000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.644

Rank 1 · LXL04_023953 · OH-1004

Nucleus0.241

Rank 2 · LXL04_023953 · OH-1004

Cell membrane0.086

Rank 3 · LXL04_023953 · OH-1004

Mitochondrion0.076

Rank 4 · LXL04_023953 · OH-1004

Endoplasmic reticulum0.073

Rank 5 · LXL04_023953 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05691.19Raffinose_syn24-749 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023953	`PF05691.19`	Raffinose_syn	24	749		1095.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FND9`	Arabidopsis thaliana	Probable galactinol--sucrose galactosyltransferase 5	65.057%	Swiss-Prot	strong database homology
`Q8RX87`	Arabidopsis thaliana	Probable galactinol--sucrose galactosyltransferase 6	40.454%	Swiss-Prot	moderate database homology
`Q94A08`	Arabidopsis thaliana	Probable galactinol--sucrose galactosyltransferase 2	37.834%	Swiss-Prot	moderate database homology
`Q5VQG4`	Oryza sativa subsp. japonica	Galactinol--sucrose galactosyltransferase	60.979%	Swiss-Prot	strong database homology

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