LXL04_023604 | RubberDandelionOmics

Gene overview

LXL04_023604

Reference: OH-1004 Chr: Chr05 Coordinates: 54949785-54950714 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

558 bp · LXL04_023604|LXL04_023604|OH1004|cDNA

ATGGATCGGAAGAAAAGATGTGCAGTTGTTACAGGAGGTAACAAAGGGATTGGATTTGAAACATGTCGACAGCTTGCTTTGAATGATGGAATTGAAGTTATTTGTTCAAATGACTCATTCCCACTTCAAATTGCTTCTTCTCTTATAATCCATTTAATTGACAAAAATATGTTTGATATCATGAAGTCAAGGAATAAAGGGCAGTTTGGTCATTTCCAGGAAATTCTGAATCAGGGCAGAAATAGATTTTTTTGGGACGA...

CDS

Download CDS FASTA

558 bp · LXL04_023604|LXL04_023604|OH1004|CDS

ATGGATCGGAAGAAAAGATGTGCAGTTGTTACAGGAGGTAACAAAGGGATTGGATTTGAAACATGTCGACAGCTTGCTTTGAATGATGGAATTGAAGTTATTTGTTCAAATGACTCATTCCCACTTCAAATTGCTTCTTCTCTTATAATCCATTTAATTGACAAAAATATGTTTGATATCATGAAGTCAAGGAATAAAGGGCAGTTTGGTCATTTCCAGGAAATTCTGAATCAGGGCAGAAATAGATTTTTTTGGGACGA...

Protein

Download Protein FASTA

185 aa · LXL04_023604|LXL04_023604|OH1004|PROTEIN

MDRKKRCAVVTGGNKGIGFETCRQLALNDGIEVICSNDSFPLQIASSLIIHLIDKNMFDIMKSRNKGQFGHFQEILNQGRNRFFWDEISDQSFDSRLRIFLDMVDKDADGKITEDEVRKDYWRRCWVIMLWIGVMVGLFTWKWIQYKDRAVYNVSYIPFGGIFVFYQRLKTEIGQNLFYFVIYKF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023604`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023604

Location Chr05:54949785-54950714 (+)

Description Similar to RBOHC: Respiratory burst oxidase homolog protein C

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51060`	Calcium-dependent NADPH oxidase that generates superoxide.	Reactive oxygen species produced by NADPH oxidase regulate plant cell growth.2003 · DOI: 10.1038/nature01485 Hydrogen peroxide mediates plant root cell response to nutrient deprivation.2004 · DOI: 10.1073/pnas.0401707101
`At4g25090`	Calcium-dependent NADPH oxidase that generates superoxide.	No verified direct reference in this release
`At5g47910`	Calcium-dependent NADPH oxidase that generates superoxide.	Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response.2002 · DOI: 10.1073/pnas.012452499 NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis.2003 · DOI: 10.1093/emboj/cdg277 Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis.2005 · DOI: 10.1105/tpc.104.026971 Extracellular ATP induces the accumulation of superoxide via NADPH oxidases in Arabidopsis.2006 · DOI: 10.1104/pp.105.073072 The role of NADPH oxidase and MAP kinase phosphatase in UV-B-dependent gene expression in Arabidopsis.2006 · DOI: 10.1111/j.1365-3040.2006.01555.x Arabidopsis thaliana expresses multiple lines of defense to counterattack Erwinia chrysanthemi.2007 · DOI: 10.1094/mpmi-20-7-0794 The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.2018 · DOI: 10.1016/j.chom.2018.08.007

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_023604 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009060 aerobic respiration Biological Process

GO:0010053 root epidermal cell differentiation Biological Process

GO:0033198 response to ATP Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0016174 NAD(P)H oxidase H2O2-forming activity Molecular Function

KEGG gene cross-reference

ath:AT5G51060

sot:102586476

sot:102598898

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.319

Rank 1 · LXL04_023604 · OH-1004

Cytoplasm0.203

Rank 2 · LXL04_023604 · OH-1004

Endoplasmic reticulum0.174

Rank 3 · LXL04_023604 · OH-1004

Nucleus0.121

Rank 4 · LXL04_023604 · OH-1004

Peroxisome0.110

Rank 5 · LXL04_023604 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O81210`	Arabidopsis thaliana	Respiratory burst oxidase homolog protein C	60.870%	Swiss-Prot	weak database homology
`Q9SW17`	Arabidopsis thaliana	Putative respiratory burst oxidase homolog protein G	44.615%	Swiss-Prot	weak database homology
`Q9FIJ0`	Arabidopsis thaliana	Respiratory burst oxidase homolog protein D	63.889%	Swiss-Prot	weak database homology

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