LXL04_023575 | RubberDandelionOmics

Gene overview

LXL04_023575

Reference: OH-1004 Chr: Chr05 Coordinates: 51775131-51777808 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

996 bp · LXL04_023575|LXL04_023575|OH1004|cDNA

ATGGTGAAGAGCGAAGCTGGTGGTGGATCGTCGGGAAGCGGAGGAGACAGTGGAAAGGACGAGCAGCACACGGCAGTTCTGGTAagctctctccctctcttctgCATTCCGATTTCACTTTGGTATTTAGCTTTGCATTTCACCTTCTTCTTCGTCGATCCCAGCCACGAATTTGGAATCAGGCAGCGAATCCACGAGCAGCACACGGCAGATGCAACCGGTGGACCAATTTTGCGGCGGTCCTGTAAACATTTTCCAGA...

CDS

Download CDS FASTA

996 bp · LXL04_023575|LXL04_023575|OH1004|CDS

ATGGTGAAGAGCGAAGCTGGTGGTGGATCGTCGGGAAGCGGAGGAGACAGTGGAAAGGACGAGCAGCACACGGCAGTTCTGGTAAGCTCTCTCCCTCTCTTCTGCATTCCGATTTCACTTTGGTATTTAGCTTTGCATTTCACCTTCTTCTTCGTCGATCCCAGCCACGAATTTGGAATCAGGCAGCGAATCCACGAGCAGCACACGGCAGATGCAACCGGTGGACCAATTTTGCGGCGGTCCTGTAAACATTTTCCAGA...

Protein

Download Protein FASTA

331 aa · LXL04_023575|LXL04_023575|OH1004|PROTEIN

MVKSEAGGGSSGSGGDSGKDEQHTAVLVSSLPLFCIPISLWYLALHFTFFFVDPSHEFGIRQRIHEQHTADATGGPILRRSCKHFPDHKLPENVIATTDAKTAFGNADFCLQSSMMYQYRSLGSVLLGKTATKGIFGKVSLFGAAWETCFCIGIWGCCGICQILTAEGSFAELRDGDKGTYLGNGVTRAVKNVNEKISEAIVGMDPTLQVPLYKHIADLSGRGNHVLPIPAFTLINGGKHAGNNLALRDIIVLPIGAKRF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023575`
TK1151 ID	TkA04G251630
OH-1004 ID	LXL04_023575
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	43.600
Protein coverage (%)	TK1151 96.465 / OH-1004 93.656 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023575

Location Chr05:51775131-51777808 (-)

Description Similar to ENO3: Cytosolic enolase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29560`	Cytosolic enolase 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_023575 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0000015 phosphopyruvate hydratase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004634 phosphopyruvate hydratase activity Molecular Function

KEGG gene cross-reference

ath:AT2G29560

rcu:8288376

sly:544068

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.275

Rank 1 · LXL04_023575 · OH-1004

Nucleus0.249

Rank 2 · LXL04_023575 · OH-1004

Cell membrane0.219

Rank 3 · LXL04_023575 · OH-1004

Endoplasmic reticulum0.170

Rank 4 · LXL04_023575 · OH-1004

Mitochondrion0.127

Rank 5 · LXL04_023575 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03952.22Enolase_N170-222 aa

PF00113.29Enolase_C225-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023575	`PF03952.22`	Enolase_N	170	222	1.9e-09	38.5
LXL04_023575	`PF00113.29`	Enolase_C	225	278	1.8e-22	80.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZW34`	Arabidopsis thaliana	Cytosolic enolase 3	48.947%	Swiss-Prot	weak database homology

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