LXL04_023511 | RubberDandelionOmics

Gene overview

LXL04_023511

Reference: OH-1004 Chr: Chr05 Coordinates: 46231483-46236603 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1425 bp · LXL04_023511|LXL04_023511|OH1004|cDNA

atgtttctttataacacatatttaaagggttttgttaaaaataatTTGAAAAAACGCAAAAAACAAAGTTGCGcatatgcaaaaaaaaagttgcacatacaaaaattaaaaaaaaaatcgttttttcggaaaaatattttgcgaccgggcttATTAATATCCAAACCATTTCACACGGATCACCCTTACCATTTCACTCGGATCGCCCATTGTACGCCTCACCATTCCTGTCCAAAGCCTCGATCTTCACCACAGCCTCG...

CDS

Download CDS FASTA

1425 bp · LXL04_023511|LXL04_023511|OH1004|CDS

ATGTTTCTTTATAACACATATTTAAAGGGTTTTGTTAAAAATAATTTGAAAAAACGCAAAAAACAAAGTTGCGCATATGCAAAAAAAAAGTTGCACATACAAAAATTAAAAAAAAAATCGTTTTTTCGGAAAAATATTTTGCGACCGGGCTTATTAATATCCAAACCATTTCACACGGATCACCCTTACCATTTCACTCGGATCGCCCATTGTACGCCTCACCATTCCTGTCCAAAGCCTCGATCTTCACCACAGCCTCG...

Protein

Download Protein FASTA

474 aa · LXL04_023511|LXL04_023511|OH1004|PROTEIN

MFLYNTYLKGFVKNNLKKRKKQSCAYAKKKLHIQKLKKKSFFRKNILRPGLLISKPFHTDHPYHFTRIAHCTPHHSCPKPRSSPQPRSSPFPLHACTLPSIPFQMARNVIDFLCTLAQPRNLIDFPLYIYPFEDYYGWIFFKLAKRSYQLPKQKHKNGSLLAGTLLAVSPVSHVMAPMGAAQSAAKELLDTILDAIVRIFDNYAVVGELLESKSSQHAAMNTPKSMVATISGIPDSEASKDTRGYTIGFSMFVLQSECQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023511`
TK1151 ID	TkA06G312400
OH-1004 ID	LXL04_023511
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 28.903 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_023511

Location Chr05:46231483-46236603 (+)

Description Similar to SEC8: Exocyst complex component SEC8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10380`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023511 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006887 exocytosis Biological Process

GO:0006893 Golgi to plasma membrane transport Biological Process

GO:0006904 vesicle docking involved in exocytosis Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0060321 acceptance of pollen Biological Process

GO:0090522 vesicle tethering involved in exocytosis Biological Process

GO:0000145 exocyst Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009524 phragmoplast Cellular Component

KEGG gene cross-reference

ath:AT3G10380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.396

Rank 1 · LXL04_023511 · OH-1004

Nucleus0.316

Rank 2 · LXL04_023511 · OH-1004

Mitochondrion0.237

Rank 3 · LXL04_023511 · OH-1004

Cell membrane0.115

Rank 4 · LXL04_023511 · OH-1004

Endoplasmic reticulum0.084

Rank 5 · LXL04_023511 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93YU5`	Arabidopsis thaliana	Exocyst complex component SEC8	60.000%	Swiss-Prot	weak database homology

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