Gene Card
Gene overview
cDNA / CDS / Protein Sequences
729 bp · LXL04_023351|LXL04_023351|OH1004|cDNA
ATGGCTGCAAAATGTTGTGTTGCTTGCGAATATATAGCTTCAGAAGGGCCTGCTCACGAAGGCGGCGAAGAAGCCATTGTAGCTTCCGAAGAGGACTGCTCGGCTTCGACAATGGCGTCCACCGGAGCATCAGAGAAGGCTGTCCTTTTCGACAAGATTGATAATTCCGGCAAGGTCGGCGTCGGTAAAAGAGAGAAGTCCGGCGATGTTCCGACTTGCGAAACTAACAATTTGGAACACAAGTCGGCGTCGGTAAAAGA...
729 bp · LXL04_023351|LXL04_023351|OH1004|CDS
ATGGCTGCAAAATGTTGTGTTGCTTGCGAATATATAGCTTCAGAAGGGCCTGCTCACGAAGGCGGCGAAGAAGCCATTGTAGCTTCCGAAGAGGACTGCTCGGCTTCGACAATGGCGTCCACCGGAGCATCAGAGAAGGCTGTCCTTTTCGACAAGATTGATAATTCCGGCAAGGTCGGCGTCGGTAAAAGAGAGAAGTCCGGCGATGTTCCGACTTGCGAAACTAACAATTTGGAACACAAGTCGGCGTCGGTAAAAGA...
Protein
Download Protein FASTA242 aa · LXL04_023351|LXL04_023351|OH1004|PROTEIN
MAAKCCVACEYIASEGPAHEGGEEAIVASEEDCSASTMASTGASEKAVLFDKIDNSGKVGVGKREKSGDVPTCETNNLEHKSASVKETVPAKVPTGEEDRTEDDRGVVDEGENGGGGCTTTTATIAEVGEGSTKRRRSTGVGIVGNLTRSTLDLKVSTSTVVSRIWYGGSHSDVPIEFVWTRYKQNQELCCFRVCYFGDPSDESGITLDKVTGEIELRHIRFKYPTRPDVRQDSDIAWREWK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023351 |
|---|---|
| TK1151 ID | TkA08G191330 |
| OH-1004 ID | LXL04_023351 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 59.800 |
| Protein coverage (%) | TK1151 89.474 / OH-1004 48.347Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023351 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:34348282-34349435 (+) | |||||||||
| Description | Similar to ABCB21: ABC transporter B family member 21 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009630 gravitropism Biological Process GO:0009733 response to auxin Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0009735 response to cytokinin Biological Process GO:0009926 auxin polar transport Biological Process GO:0010315 auxin export across the plasma membrane Biological Process GO:0010540 basipetal auxin transport Biological Process GO:0048767 root hair elongation Biological Process GO:0055085 transmembrane transport Biological Process GO:0060919 auxin import into cell Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G47000 ath:AT3G62150 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.