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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_023105
Reference: OH-1004 Chr: Chr05 Coordinates: 23440264-23443819 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1632 bp · LXL04_023105|LXL04_023105|OH1004|cDNA

ATGGATTTTGCAAAGCGCTTGTGTAGAAAATTAGTACCAAAAGATAAACCTAAATCTTCAAAGAAAAAAGAAGTCAGAAGCTATGGAAAAGAAGGTCTAAGAGCAACGAGTGAAGAAGCACCTTCAAATGCAACTAAACAGAAAGTTGAAGCTGCTAAACAGTATATAGAAAAACACTACAAGGAGCAAATGAAGAATCTTAATGAAAGAAGGGAACGGCGTAATGTACTTGAGAAGAAACTGGCTGATTCAGAGGTCAC...

CDS

Download CDS FASTA

1632 bp · LXL04_023105|LXL04_023105|OH1004|CDS

ATGGATTTTGCAAAGCGCTTGTGTAGAAAATTAGTACCAAAAGATAAACCTAAATCTTCAAAGAAAAAAGAAGTCAGAAGCTATGGAAAAGAAGGTCTAAGAGCAACGAGTGAAGAAGCACCTTCAAATGCAACTAAACAGAAAGTTGAAGCTGCTAAACAGTATATAGAAAAACACTACAAGGAGCAAATGAAGAATCTTAATGAAAGAAGGGAACGGCGTAATGTACTTGAGAAGAAACTGGCTGATTCAGAGGTCAC...

Protein

Download Protein FASTA

543 aa · LXL04_023105|LXL04_023105|OH1004|PROTEIN

MDFAKRLCRKLVPKDKPKSSKKKEVRSYGKEGLRATSEEAPSNATKQKVEAAKQYIEKHYKEQMKNLNERRERRNVLEKKLADSEVTEEEQNNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKTSGNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKSGHMKLSDF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_023105
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_023105
LocationChr05:23440264-23443819 (+)
DescriptionSimilar to trc: Serine/threonine-protein kinase tricorner
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023105 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000077 DNA damage checkpoint signaling Biological Process
GO:0006468 protein phosphorylation Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007163 establishment or maintenance of cell polarity Biological Process
GO:0007165 signal transduction Biological Process
GO:0010507 negative regulation of autophagy Biological Process
GO:0018105 peptidyl-serine phosphorylation Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0036211 protein modification process Biological Process
GO:0043407 negative regulation of MAP kinase activity Biological Process
GO:0051012 microtubule sliding Biological Process
GO:0051128 regulation of cellular component organization Biological Process
KEGG gene cross-reference
dme:Dmel_CG8637
dpo:4813412
hsa:11329
hsa:23012
pon:100173048
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.607
Rank 1 · LXL04_023105 · OH-1004
Nucleus0.403
Rank 2 · LXL04_023105 · OH-1004
Cell membrane0.175
Rank 3 · LXL04_023105 · OH-1004
Mitochondrion0.051
Rank 4 · LXL04_023105 · OH-1004
Golgi apparatus0.042
Rank 5 · LXL04_023105 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase120-270 aa
PF07714.24PK_Tyr_Ser-Thr122-268 aa
PF03109.23ABC1192-267 aa
PF00069.32Pkinase314-417 aa
PF07714.24PK_Tyr_Ser-Thr321-382 aa
PF00433.30Pkinase_C436-480 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_023105PF00069.32Pkinase1202702.6e-65221.2
LXL04_023105PF07714.24PK_Tyr_Ser-Thr1222683.8e-29102.5
LXL04_023105PF03109.23ABC11922673.5e-0627.1
LXL04_023105PF00069.32Pkinase3144172.6e-65221.2
LXL04_023105PF07714.24PK_Tyr_Ser-Thr3213823.8e-29102.5
LXL04_023105PF00433.30Pkinase_C4364801.4e-0732.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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