Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1023 bp · LXL04_023049|LXL04_023049|OH1004|cDNA
ATGGCGCAATCTTCAAATTTCCCTCTCCATATTTACCCTCCCGTCGAGGCTGTAGAGAACGAAGACCCACAGCAAACCCTCCATCTCGGTCGGGGTTCAGTTAGCCCCAAATCATCAGTGCTGTTTAAAATCGACCGGGGAGGGAAAGATTTCGTCATTACCGTCACCCCGGATCAGAATTCCGACGGAAGTGGTCGAATCGGGGTTCAGTTAGCCCCAAACGTGAAGATCTTGAAGGAAAAACCGAAAGATGTCCTCGA...
1023 bp · LXL04_023049|LXL04_023049|OH1004|CDS
ATGGCGCAATCTTCAAATTTCCCTCTCCATATTTACCCTCCCGTCGAGGCTGTAGAGAACGAAGACCCACAGCAAACCCTCCATCTCGGTCGGGGTTCAGTTAGCCCCAAATCATCAGTGCTGTTTAAAATCGACCGGGGAGGGAAAGATTTCGTCATTACCGTCACCCCGGATCAGAATTCCGACGGAAGTGGTCGAATCGGGGTTCAGTTAGCCCCAAACGTGAAGATCTTGAAGGAAAAACCGAAAGATGTCCTCGA...
Protein
Download Protein FASTA340 aa · LXL04_023049|LXL04_023049|OH1004|PROTEIN
MAQSSNFPLHIYPPVEAVENEDPQQTLHLGRGSVSPKSSVLFKIDRGGKDFVITVTPDQNSDGSGRIGVQLAPNVKILKEKPKDVLEAFSLTGREFWGLTSNVEDSLKQAVLNFSQSASKVSGPIAIIAVGAEVAKSNVDGLYQFLSVLVGLEESNILGPYMSDAIIDISKSCEAFEAKEAAPSIAGVMCEAKINNFFLTGSCYLAARLISLVGTEIVVFFGIAALASTVCEVFGFNRQQLDDKIFKGQFRHSASFGNCK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023049 |
|---|---|
| TK1151 ID | TkA01G271850 |
| OH-1004 ID | LXL04_023049 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 78.906 / OH-1004 29.706Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023049 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:20948538-20950405 (+) | |||||||||
| Description | Similar to ARASP: Membrane metalloprotease ARASP, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0006887 exocytosis Biological Process GO:0006893 Golgi to plasma membrane transport Biological Process GO:0006952 defense response Biological Process GO:0009409 response to cold Biological Process GO:0009644 response to high light intensity Biological Process GO:0009658 chloroplast organization Biological Process GO:0015031 protein transport Biological Process GO:0000145 exocyst Cellular Component GO:0005576 extracellular region Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ana:all3971 ath:AT1G05140 ath:AT2G32480 syn:slr1821 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.