Gene Card
Gene overview
cDNA / CDS / Protein Sequences
456 bp · LXL04_023045|LXL04_023045|OH1004|cDNA
atgcaggattttcacaaacaaactcttatgaactcaccaacctttgtgttgacactttcaaaactcatgcaatctcagGTCCAGCCAATTGTTGATGATGTTTGCAACAGAGGCGATGCTGCTGTTAAAGACTATACTTCACGGTTTGACAAAGTTGAGTTAAAAAAGATAATTGAAAATGTCAATGAACTTCCAGATCCAGAGTTTGATGTTGCACAAAAACCAGTTGAGAATATGAAAGGTGTGAGCATATCTTCTGT...
456 bp · LXL04_023045|LXL04_023045|OH1004|CDS
ATGCAGGATTTTCACAAACAAACTCTTATGAACTCACCAACCTTTGTGTTGACACTTTCAAAACTCATGCAATCTCAGGTCCAGCCAATTGTTGATGATGTTTGCAACAGAGGCGATGCTGCTGTTAAAGACTATACTTCACGGTTTGACAAAGTTGAGTTAAAAAAGATAATTGAAAATGTCAATGAACTTCCAGATCCAGAGTTTGATGTTGCACAAAAACCAGTTGAGAATATGAAAGGTGTGAGCATATCTTCTGT...
Protein
Download Protein FASTA151 aa · LXL04_023045|LXL04_023045|OH1004|PROTEIN
MQDFHKQTLMNSPTFVLTLSKLMQSQVQPIVDDVCNRGDAAVKDYTSRFDKVELKKIIENVNELPDPEFDVAQKPVENMKGVSISSVGLYVPGGTVVLPSTALMLSVQSAGCKTIVLATPPSSDGSICKEGFKEACMNKTNSLGMNLVASS
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023045 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023045 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:20523851-20534234 (+) | ||||||||||||
| Description | Similar to HDH: Histidinol dehydrogenase, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000105 L-histidine biosynthetic process Biological Process GO:0009411 response to UV Biological Process GO:0009555 pollen development Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0004399 histidinol dehydrogenase activity Molecular Function GO:0004635 phosphoribosyl-AMP cyclohydrolase activity Molecular Function GO:0004636 phosphoribosyl-ATP diphosphatase activity Molecular Function GO:0005524 ATP binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT5G63890 dosa:Os01g0232700 spo:2539650 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00815.26Histidinol_dh23-59 aaPF00815.26Histidinol_dh80-129 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023045 | PF00815.26 | Histidinol_dh | 23 | 59 | 1.7e-19 | 70.9 |
| LXL04_023045 | PF00815.26 | Histidinol_dh | 80 | 129 | 1.7e-19 | 70.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.