LXL04_023020 | RubberDandelionOmics

Gene overview

LXL04_023020

Reference: OH-1004 Chr: Chr05 Coordinates: 19095025-19096529 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1407 bp · LXL04_023020|LXL04_023020|OH1004|cDNA

ATGCCTACCCTTAAAATCCCCCCCGGCCCTAGGAGGTTACCATTAATAGGAACCCTTCACCGCCTCATTGGCAAAGATGGTGTCCATCAAACCCTACGTAATCTCTCCGAAACATACGGTCCAGCTATGCTTCTTCATTTTGGTGCCCAGCCGGTCCTTGTCATTTCCTCCACCGAAATGGCTGCTGAAGTCCTTAAAACTCATGATCAGAAGATGTGCACGCGTCCGTACTCTAAGTCTACCAACCGGCTCTCGTATAA...

CDS

Download CDS FASTA

1407 bp · LXL04_023020|LXL04_023020|OH1004|CDS

ATGCCTACCCTTAAAATCCCCCCCGGCCCTAGGAGGTTACCATTAATAGGAACCCTTCACCGCCTCATTGGCAAAGATGGTGTCCATCAAACCCTACGTAATCTCTCCGAAACATACGGTCCAGCTATGCTTCTTCATTTTGGTGCCCAGCCGGTCCTTGTCATTTCCTCCACCGAAATGGCTGCTGAAGTCCTTAAAACTCATGATCAGAAGATGTGCACGCGTCCGTACTCTAAGTCTACCAACCGGCTCTCGTATAA...

Protein

Download Protein FASTA

468 aa · LXL04_023020|LXL04_023020|OH1004|PROTEIN

MPTLKIPPGPRRLPLIGTLHRLIGKDGVHQTLRNLSETYGPAMLLHFGAQPVLVISSTEMAAEVLKTHDQKMCTRPYSKSTNRLSYNYKDIAFAPHNDHWRDMRKVMVSEFLGAKRMRLYNRVMENEMEDMVRSLSSMSSSRITVNLDDMLFNLVNDVVCKVAFGKTYRENTFNGKTMKEIVDESVVMLGGSFADIFPTFGWIFDRLSGWDRRLEKCVNDFDGFLEMILDDNREGKTNEHGNDFVSDCSDVLNRDEMKAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023020`
TK1151 ID	TkA06G414560
OH-1004 ID	LXL04_023020
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.100
Protein coverage (%)	TK1151 97.942 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023020

Location Chr05:19095025-19096529 (+)

Description Similar to CYP71CA1: Parthenolide synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13110`	Cytochrome P450 71B7.	No verified direct reference in this release
`At3g26280`	Cytochrome P450 71B4.	No verified direct reference in this release
`At5g57260`	Cytochrome P450 71B10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023020 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0051762 sesquiterpene biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Molecular Function

GO:0020037 heme binding Molecular Function

GO:0102626 parthenolide synthase activity Molecular Function

GO:0106244 eupatolide synthase activity Molecular Function

KEGG gene cross-reference

ath:AT1G13110

ath:AT3G26280

ath:AT5G57260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.917

Rank 1 · LXL04_023020 · OH-1004

Cell membrane0.046

Rank 2 · LXL04_023020 · OH-1004

Cytoplasm0.037

Rank 3 · LXL04_023020 · OH-1004

Plastid0.027

Rank 4 · LXL04_023020 · OH-1004

Nucleus0.019

Rank 5 · LXL04_023020 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p4507-445 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023020	`PF00067.28`	p450	7	445	4.1e-98	329.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q96514`	Arabidopsis thaliana	Cytochrome P450 71B7	39.832%	Swiss-Prot	moderate database homology
`O65786`	Arabidopsis thaliana	Cytochrome P450 71B4	40.169%	Swiss-Prot	moderate database homology
`Q9LVD2`	Arabidopsis thaliana	Cytochrome P450 71B10	40.466%	Swiss-Prot	moderate database homology

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