LXL04_022813 | RubberDandelionOmics

Gene overview

LXL04_022813

Reference: OH-1004 Chr: Chr05 Coordinates: 10034388-10036979 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1362 bp · LXL04_022813|LXL04_022813|OH1004|cDNA

ATGGCGCAGAAtcaaggtggtggtggtggtggtttctTTTCGTCGATCGCTTCAAGTTTCTCCAGTTTCAAGAATCAAGTGAACGGACTTCTTGGTTATGAGGGACTTGAAGTTATTAACCCTGAGGGAGGCACTGATGATGCTGAAGTTGAAGCACAAAGAGGCAGATGGAAAGGAGAGGAGCGTGATAGTTACTGGAGGTCAATGCAGAAATATGTGGGTGCTGACATCACATCAATGGTGACTTTACCAGTACTCAT...

CDS

Download CDS FASTA

1362 bp · LXL04_022813|LXL04_022813|OH1004|CDS

ATGGCGCAGAATCAAGGTGGTGGTGGTGGTGGTTTCTTTTCGTCGATCGCTTCAAGTTTCTCCAGTTTCAAGAATCAAGTGAACGGACTTCTTGGTTATGAGGGACTTGAAGTTATTAACCCTGAGGGAGGCACTGATGATGCTGAAGTTGAAGCACAAAGAGGCAGATGGAAAGGAGAGGAGCGTGATAGTTACTGGAGGTCAATGCAGAAATATGTGGGTGCTGACATCACATCAATGGTGACTTTACCAGTACTCAT...

Protein

Download Protein FASTA

453 aa · LXL04_022813|LXL04_022813|OH1004|PROTEIN

MAQNQGGGGGGFFSSIASSFSSFKNQVNGLLGYEGLEVINPEGGTDDAEVEAQRGRWKGEERDSYWRSMQKYVGADITSMVTLPVLIFEPMTMLQKMAELMEYAHLLEQADNCEDPYMRLVYTASWFISVYYALQRTWKPFNPILGETYEMINHCGITFIAEQVSHHPPISAAHAENEHFVYDLTSKVKTKFLGNSVDVYPLGRTRLKLKKDGVILELVPPPTKVNNLIFGRTWIDSPGEMVLTNLTSGDKVVLYFQPCG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022813`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022813

Location Chr05:10034388-10036979 (-)

Description Similar to ORP3A: Oxysterol-binding protein-related protein 3A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02100`	Oxysterol-binding protein that may be involved in the transport of sterols between the ER and the Golgi.	The targeting of the oxysterol-binding protein ORP3a to the endoplasmic reticulum relies on the plant VAP33 homolog PVA12.2009 · DOI: 10.1111/j.1365-313x.2009.03815.x
`At5g59420`	May be involved in the transport of sterols.	No verified direct reference in this release
`At3g09300`	May be involved in the transport of sterols.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022813 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006869 lipid transport Biological Process

GO:0006887 exocytosis Biological Process

GO:0006897 endocytosis Biological Process

GO:0009567 double fertilization forming a zygote and endosperm Biological Process

GO:0015914 phospholipid transport Biological Process

GO:0030011 maintenance of cell polarity Biological Process

GO:0034727 piecemeal microautophagy of the nucleus Biological Process

GO:0050830 defense response to Gram-positive bacterium Biological Process

GO:0120011 intermembrane sterol transfer Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G09300

ath:AT5G02100

ath:AT5G59420

ddi:DDB_G0283709

spo:2540357

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.494

Rank 1 · LXL04_022813 · OH-1004

Golgi apparatus0.284

Rank 2 · LXL04_022813 · OH-1004

Endoplasmic reticulum0.264

Rank 3 · LXL04_022813 · OH-1004

Cell membrane0.189

Rank 4 · LXL04_022813 · OH-1004

Nucleus0.162

Rank 5 · LXL04_022813 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01237.24Oxysterol_BP64-422 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022813	`PF01237.24`	Oxysterol_BP	64	422	1.2e-113	380.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LZM1`	Arabidopsis thaliana	Oxysterol-binding protein-related protein 3A	74.229%	Swiss-Prot	strong database homology
`Q93Y40`	Arabidopsis thaliana	Oxysterol-binding protein-related protein 3C	73.933%	Swiss-Prot	strong database homology
`Q9SR33`	Arabidopsis thaliana	Oxysterol-binding protein-related protein 3B	73.363%	Swiss-Prot	strong database homology

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