LXL04_022783 | RubberDandelionOmics

Gene overview

LXL04_022783

Reference: OH-1004 Chr: Chr05 Coordinates: 9229453-9230629 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

852 bp · LXL04_022783|LXL04_022783|OH1004|cDNA

ATGTATATCGAAGAACTGAAAGAGGGCGGTGATAGCGATGTAGATATGGAGTTGTCTGCTGAATTctccggcggtggtccggtggtgtCTTCAAACACGAAAAGGGTTTTGGTCGGAGCAGGAGCTCGTGCTCTTTTTTATCCAACACTTCTGTACAATGTTGTCAGGAACAAGATTCAGACCGAGTTTCGTTGGTGGGATAGAGTCGATCAGTTTATATTATTAGGTGCTGTACCCTTTCCTACCGATGTTTTGCACCT...

CDS

Download CDS FASTA

852 bp · LXL04_022783|LXL04_022783|OH1004|CDS

ATGTATATCGAAGAACTGAAAGAGGGCGGTGATAGCGATGTAGATATGGAGTTGTCTGCTGAATTCTCCGGCGGTGGTCCGGTGGTGTCTTCAAACACGAAAAGGGTTTTGGTCGGAGCAGGAGCTCGTGCTCTTTTTTATCCAACACTTCTGTACAATGTTGTCAGGAACAAGATTCAGACCGAGTTTCGTTGGTGGGATAGAGTCGATCAGTTTATATTATTAGGTGCTGTACCCTTTCCTACCGATGTTTTGCACCT...

Protein

Download Protein FASTA

283 aa · LXL04_022783|LXL04_022783|OH1004|PROTEIN

MYIEELKEGGDSDVDMELSAEFSGGGPVVSSNTKRVLVGAGARALFYPTLLYNVVRNKIQTEFRWWDRVDQFILLGAVPFPTDVLHLKELGVGGVVTLNESYETLVPSSLYYAHGIEHLVIPTRDYLFAPMSDDICKAVEFIHENATSGKTTYVHCKAGRGRSTTIVLCYLVKHKHMTPDVAYNYVKSIRPRVRLAYSQWQAVQDYYKKNQKVIIKSEFEPFDDASMVMVKESDLEGYKESIVGNKILAELCRAQFVTSQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022783`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022783

Location Chr05:9229453-9230629 (-)

Description Similar to PTPMT1: Phosphatidylglycerophosphate phosphatase PTPMT1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35680`	Exhibits phosphatidylglycerophosphate phosphatase activity.	Phosphatidylglycerophosphate phosphatase is required for root growth in Arabidopsis.2018 · DOI: 10.1016/j.bbalip.2018.02.007
`At5g56610`	Exhibits phosphatidylglycerophosphate phosphatase activity.	Phosphatidylglycerophosphate phosphatase is required for root growth in Arabidopsis.2018 · DOI: 10.1016/j.bbalip.2018.02.007

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022783 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006655 phosphatidylglycerol biosynthetic process Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0032049 cardiolipin biosynthetic process Biological Process

GO:0042593 glucose homeostasis Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0004725 protein tyrosine phosphatase activity Molecular Function

GO:0008962 phosphatidylglycerophosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT2G35680

ath:AT5G56610

dme:Dmel_CG10371

dre:567019

hsa:114971

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.296

Rank 1 · LXL04_022783 · OH-1004

Cytoplasm0.226

Rank 2 · LXL04_022783 · OH-1004

Endoplasmic reticulum0.171

Rank 3 · LXL04_022783 · OH-1004

Nucleus0.128

Rank 4 · LXL04_022783 · OH-1004

Plastid0.126

Rank 5 · LXL04_022783 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22784.2PTP-SAK81-184 aa

PF22785.2Tc-R-P86-174 aa

PF00782.26DSPc109-208 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022783	`PF22784.2`	PTP-SAK	81	184	6.8e-13	49.7
LXL04_022783	`PF22785.2`	Tc-R-P	86	174	2.2e-13	51.4
LXL04_022783	`PF00782.26`	DSPc	109	208	2.1e-20	73.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZQP1`	Arabidopsis thaliana	Phosphatidylglycerophosphate phosphatase PTPMT1	55.128%	Swiss-Prot	strong database homology
`Q6NKR2`	Arabidopsis thaliana	Phosphatidylglycerophosphate phosphatase PTPMT2	67.429%	Swiss-Prot	moderate database homology

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