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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_022748
Reference: OH-1004 Chr: Chr05 Coordinates: 7474779-7488642 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4392 bp · LXL04_022748|LXL04_022748|OH1004|cDNA

ATGCATAGCCGAGCTATTGGCTGGCTACACTTCGGTGTACATATGTGTGTCATTCTCATTCAGCATTCATATCCCCTTTTAGCTCTATTTTTTCACTTGATAAACACAAACATCATGTCTTCATCAGCCAACAAAAAGTTTGCTCACTTACAGATCCCACTTGAAGAGATACAATCTGCCACCAGAAACTTTTCCAAACAGAATTTCATAAAAAAGGCGGTAATAGGAAACGTTTACAGAGGACAACTGTCAAGGTCCGG...

CDS

Download CDS FASTA

4392 bp · LXL04_022748|LXL04_022748|OH1004|CDS

ATGCATAGCCGAGCTATTGGCTGGCTACACTTCGGTGTACATATGTGTGTCATTCTCATTCAGCATTCATATCCCCTTTTAGCTCTATTTTTTCACTTGATAAACACAAACATCATGTCTTCATCAGCCAACAAAAAGTTTGCTCACTTACAGATCCCACTTGAAGAGATACAATCTGCCACCAGAAACTTTTCCAAACAGAATTTCATAAAAAAGGCGGTAATAGGAAACGTTTACAGAGGACAACTGTCAAGGTCCGG...

Protein

Download Protein FASTA

1463 aa · LXL04_022748|LXL04_022748|OH1004|PROTEIN

MHSRAIGWLHFGVHMCVILIQHSYPLLALFFHLINTNIMSSSANKKFAHLQIPLEEIQSATRNFSKQNFIKKAVIGNVYRGQLSRSGQKIDILAQRIDCSSGFGDIELWREILTLSRLGSHRNLSSVIGFFNEKNEKIIIRKQEANGSLDQCLADPTLTWMRRLRICVGVAQALSYMYYQKGRDFSVIHCDITSSKILLDDQWQPKLSGFEFSLTQTIDRRNDPCLTDIWGFSTCDPVCAEERSVSHKSEVYSLGVVLME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_022748
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_022748
LocationChr05:7474779-7488642 (+)
DescriptionSimilar to At5g59700: Probable receptor-like protein kinase At5g59700
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g59700 Probable receptor-like protein kinase At5g59700. No verified direct reference in this release
At3g46290 Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.
Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
At2g23200 Probable receptor-like protein kinase At2g23200. No verified direct reference in this release
At3g51550 May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.
FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
At5g61350 Probable receptor-like protein kinase At5g61350. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022748 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0043680 filiform apparatus Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G46290
ath:AT5G59700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.441
Rank 1 · LXL04_022748 · OH-1004
Cell membrane0.398
Rank 2 · LXL04_022748 · OH-1004
Nucleus0.290
Rank 3 · LXL04_022748 · OH-1004
Endoplasmic reticulum0.053
Rank 4 · LXL04_022748 · OH-1004
Golgi apparatus0.041
Rank 5 · LXL04_022748 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr70-329 aa
PF00069.32Pkinase106-327 aa
PF07714.24PK_Tyr_Ser-Thr412-662 aa
PF00069.32Pkinase451-716 aa
PF00069.32Pkinase748-1013 aa
PF07714.24PK_Tyr_Ser-Thr750-1014 aa
PF14299.14PP21082-1200 aa
PF14299.14PP21300-1462 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_022748PF07714.24PK_Tyr_Ser-Thr703292.7e-104348.8
LXL04_022748PF00069.32Pkinase1063275.3e-91305.4
LXL04_022748PF07714.24PK_Tyr_Ser-Thr4126622.7e-104348.8
LXL04_022748PF00069.32Pkinase4517165.3e-91305.4
LXL04_022748PF00069.32Pkinase74810135.3e-91305.4
LXL04_022748PF07714.24PK_Tyr_Ser-Thr75010142.7e-104348.8
LXL04_022748PF14299.14PP2108212002.6e-35122.3
LXL04_022748PF14299.14PP2130014622.6e-35122.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FN92Arabidopsis thalianaProbable receptor-like protein kinase At5g5970040.351%Swiss-Protweak database homology
Q9LX66Arabidopsis thalianaReceptor-like protein kinase HERK 139.385%Swiss-Protweak database homology
O22187Arabidopsis thalianaProbable receptor-like protein kinase At2g2320041.742%Swiss-Protweak database homology
Q9SCZ4Arabidopsis thalianaReceptor-like protein kinase FERONIA35.680%Swiss-Protweak database homology
Q9FLJ8Arabidopsis thalianaProbable receptor-like protein kinase At5g6135038.187%Swiss-Protweak database homology

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