LXL04_022350 | RubberDandelionOmics

Gene overview

LXL04_022350

Reference: OH-1004 Chr: Chr04 Coordinates: 148885888-148887156 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1269 bp · LXL04_022350|LXL04_022350|OH1004|cDNA

ATGGGATCTGTTTCTCTCAAAATCGGCGACGGAACTGCAAGATTCAAGAGCGCCACCGTCTGCTCATCGGCTGTACATATTCTCATGCTATTTTCAGTCATAACCACAAATCTGTTTGCCTTATACGCCTTCACATACTCCCCCAAACCCAATCACCAGATTCACTTCCTAAATCACCACCATACCCACAAGAACATCTCGTTAATCTCAGAGCAAGTCTCCTTAATCCTCCGAGAGATCGATACTTCCCAAAAGAAACT...

CDS

Download CDS FASTA

1269 bp · LXL04_022350|LXL04_022350|OH1004|CDS

ATGGGATCTGTTTCTCTCAAAATCGGCGACGGAACTGCAAGATTCAAGAGCGCCACCGTCTGCTCATCGGCTGTACATATTCTCATGCTATTTTCAGTCATAACCACAAATCTGTTTGCCTTATACGCCTTCACATACTCCCCCAAACCCAATCACCAGATTCACTTCCTAAATCACCACCATACCCACAAGAACATCTCGTTAATCTCAGAGCAAGTCTCCTTAATCCTCCGAGAGATCGATACTTCCCAAAAGAAACT...

Protein

Download Protein FASTA

422 aa · LXL04_022350|LXL04_022350|OH1004|PROTEIN

MGSVSLKIGDGTARFKSATVCSSAVHILMLFSVITTNLFALYAFTYSPKPNHQIHFLNHHHTHKNISLISEQVSLILREIDTSQKKLAQMEKQLLGYESIDLSTPNMPNELKLFLQRNQLPLGKDSRTGITEMVASVGHSCYKSMDFLSQFMSYKANGACPDDWSLSQKLILKGCEPLPRRRCFAKTIPKVGLLHPFPLSLWRNVSEKIYSWSGLGCKNLICLNSKKLNRDCAGCFDITNGNENQRFVKSRGKNDFLIDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022350`
TK1151 ID	TkA05G461970
OH-1004 ID	LXL04_022350
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	95.900
Protein coverage (%)	TK1151 100.000 / OH-1004 68.720 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_022350

Location Chr04:148885888-148887156 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29790`	Probable methyltransferase At1g29790.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022350 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0008168 methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G29790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.580

Rank 1 · LXL04_022350 · OH-1004

Endoplasmic reticulum0.124

Rank 2 · LXL04_022350 · OH-1004

Extracellular0.099

Rank 3 · LXL04_022350 · OH-1004

Cell membrane0.083

Rank 4 · LXL04_022350 · OH-1004

Nucleus0.056

Rank 5 · LXL04_022350 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141.23Methyltransf_29266-371 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022350	`PF03141.23`	Methyltransf_29	266	371	3.5e-06	26.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RWB7`	Arabidopsis thaliana	Probable methyltransferase At1g29790	35.374%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card