LXL04_022348 | RubberDandelionOmics

Gene overview

LXL04_022348

Reference: OH-1004 Chr: Chr04 Coordinates: 148873240-148876958 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1170 bp · LXL04_022348|LXL04_022348|OH1004|cDNA

ATGTTTCCCCTCTTGTCCAGAATTACACCAACCAGGCCACTGGTGATAGGGTCGGCTGATAAGATGTTACCTGTGACCTACTCACACTGTACCGCCGCCGTCGACGGTATATCGCCTGCGTCGTCGTCGGATCAATCACGCCGGAGCAAAAGCAGATTCATCAGTAAACCTTCATGGCTCCTACTCTCGATTTCCGACATGGAGGATAAAATACAATCACTAAACGGAGAAGACAAGCCAGACACATTCGGTGAACGCGC...

CDS

Download CDS FASTA

1170 bp · LXL04_022348|LXL04_022348|OH1004|CDS

ATGTTTCCCCTCTTGTCCAGAATTACACCAACCAGGCCACTGGTGATAGGGTCGGCTGATAAGATGTTACCTGTGACCTACTCACACTGTACCGCCGCCGTCGACGGTATATCGCCTGCGTCGTCGTCGGATCAATCACGCCGGAGCAAAAGCAGATTCATCAGTAAACCTTCATGGCTCCTACTCTCGATTTCCGACATGGAGGATAAAATACAATCACTAAACGGAGAAGACAAGCCAGACACATTCGGTGAACGCGC...

Protein

Download Protein FASTA

389 aa · LXL04_022348|LXL04_022348|OH1004|PROTEIN

MFPLLSRITPTRPLVIGSADKMLPVTYSHCTAAVDGISPASSSDQSRRSKSRFISKPSWLLLSISDMEDKIQSLNGEDKPDTFGERADFYYRKRPELLALLQDLYNRYLHLADRYTRTLSKQQQQQQRHHESEPPSPISIHYSEDAETSISHQSPLRPQKPNPSDLVISELVMKFVEFDFMVDELQVCDSVQEEARKKIELQKSLLEVLESERVVLTNENSRLASESLFMKRKAGELARCVLLERTEDQRVFVLSRKIDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022348`
TK1151 ID	TkA05G461780
OH-1004 ID	LXL04_022348
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 94.602 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022348

Location Chr04:148873240-148876958 (-)

Description Similar to At1g48405: Kinase-interacting family protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g48405`	May be involved in the receptor-like kinase-mediated signal transduction pathway.	No verified direct reference in this release
`At4g14760`	Plant-specific actin binding protein.	No verified direct reference in this release
`At1g58215`	Plant-specific actin binding protein.	No verified direct reference in this release
`At3g22790`	Plant-specific actin binding protein.	A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants.2012 · DOI: 10.1016/j.cub.2012.06.041
`At1g03080`	Plant-specific actin binding protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022348 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0003779 actin binding Molecular Function

GO:0051015 actin filament binding Molecular Function

KEGG gene cross-reference

ath:AT1G03080

ath:AT1G48405

ath:AT1G58215

ath:AT3G22790

ath:AT4G14760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.392

Rank 1 · LXL04_022348 · OH-1004

Cytoplasm0.386

Rank 2 · LXL04_022348 · OH-1004

Cell membrane0.283

Rank 3 · LXL04_022348 · OH-1004

Endoplasmic reticulum0.079

Rank 4 · LXL04_022348 · OH-1004

Mitochondrion0.044

Rank 5 · LXL04_022348 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07765.18KIP156-115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022348	`PF07765.18`	KIP1	56	115	4.9e-11	43.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SX73`	Arabidopsis thaliana	Kinase-interacting family protein	35.417%	Swiss-Prot	moderate database homology
`F4JIF4`	Arabidopsis thaliana	Protein NETWORKED 1B	33.333%	Swiss-Prot	weak database homology
`P0DMS1`	Arabidopsis thaliana	Protein NETWORKED 2A	33.019%	Swiss-Prot	weak database homology
`Q9LUI2`	Arabidopsis thaliana	Protein NETWORKED 1A	31.776%	Swiss-Prot	weak database homology
`F4HZB5`	Arabidopsis thaliana	Protein NETWORKED 1D	35.897%	Swiss-Prot	weak database homology

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