LXL04_022123 | RubberDandelionOmics

Gene overview

LXL04_022123

Reference: OH-1004 Chr: Chr04 Coordinates: 145021602-145027786 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4320 bp · LXL04_022123|LXL04_022123|OH1004|cDNA

ATGGCGGCATCACATACTGGAGATGACGTGGCGAGGTCACAGTTGAGTTTATCGGCATCAAGTAGGAACTGGGCTTCAGCTAGCCTCAGAGATGCTTTCTCTGGAGCACCTGGAGGCGATGCTTTTGAGAAAATTGGGATgcaagatgatgaagatgaactCAAATTGGCTGCAATTGAGAGGCTTCCTACTTATGAAGGATCAAAGAAAGAAATGTTGAAGCAAGTTCCTGATAATGGAAGAACCCACACTACAAATAC...

CDS

Download CDS FASTA

4320 bp · LXL04_022123|LXL04_022123|OH1004|CDS

ATGGCGGCATCACATACTGGAGATGACGTGGCGAGGTCACAGTTGAGTTTATCGGCATCAAGTAGGAACTGGGCTTCAGCTAGCCTCAGAGATGCTTTCTCTGGAGCACCTGGAGGCGATGCTTTTGAGAAAATTGGGATGCAAGATGATGAAGATGAACTCAAATTGGCTGCAATTGAGAGGCTTCCTACTTATGAAGGATCAAAGAAAGAAATGTTGAAGCAAGTTCCTGATAATGGAAGAACCCACACTACAAATAC...

Protein

Download Protein FASTA

1439 aa · LXL04_022123|LXL04_022123|OH1004|PROTEIN

MAASHTGDDVARSQLSLSASSRNWASASLRDAFSGAPGGDAFEKIGMQDDEDELKLAAIERLPTYEGSKKEMLKQVPDNGRTHTTNTGPLDKKQLMENVLKLVEEDNETFLRCLRERTDRVGIEIPKIEVRYKNLSIEGNVFIGSRALPTLFNATLNAIEGFLQVLRIVPSNKQVLKILQDVSGILRPSRMTLLLGPPSAGKTTFLKTLAGVPVKDLTITGEVTYCGHKMSEFIPQRTCAYISQHDVHHGEMTVRETFDF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022123`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_022123

Location Chr04:145021602-145027786 (-)

Description Similar to PDR2: Pleiotropic drug resistance protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36380`	May be a general defense protein.	No verified direct reference in this release
`At1g66950`	May be a general defense protein.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0587600`	May be a general defense protein.	No verified direct reference in this release
`Os07g0522500`	ABC transporter modulating cadmium (Cd) import, thus controlling Cd²⁺ accumulation to prevent phytotoxicity.	Rice ABCG43 is Cd inducible and confers Cd tolerance on yeast.2011 · DOI: 10.1271/bbb.110193 Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.2023 · DOI: 10.1016/j.jare.2022.05.010

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022123 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009914 hormone transport Biological Process

GO:0015691 cadmium ion transport Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0042908 xenobiotic transport Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0098657 import into cell Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G66950

ath:AT2G36380

dosa:Os07g0522500

dosa:Os11g0587600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.663

Rank 1 · LXL04_022123 · OH-1004

Endoplasmic reticulum0.164

Rank 2 · LXL04_022123 · OH-1004

Cytoplasm0.119

Rank 3 · LXL04_022123 · OH-1004

Lysosome / Vacuole0.092

Rank 4 · LXL04_022123 · OH-1004

Golgi apparatus0.077

Rank 5 · LXL04_022123 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14510.12ABC_trans_N104-154 aa

PF00005.34ABC_tran179-360 aa

PF19055.7ABC2_membrane_7394-445 aa

PF01061.30ABC2_membrane516-727 aa

PF08370.17PDR_assoc732-798 aa

PF00005.34ABC_tran866-1018 aa

PF19055.7ABC2_membrane_71047-1078 aa

PF01061.30ABC2_membrane1163-1376 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022123	`PF14510.12`	ABC_trans_N	104	154	7.3e-08	33.4
LXL04_022123	`PF00005.34`	ABC_tran	179	360	2e-37	129.6
LXL04_022123	`PF19055.7`	ABC2_membrane_7	394	445	1.6e-15	57.7
LXL04_022123	`PF01061.30`	ABC2_membrane	516	727	1e-102	342.9
LXL04_022123	`PF08370.17`	PDR_assoc	732	798	1.7e-21	76.4
LXL04_022123	`PF00005.34`	ABC_tran	866	1018	2e-37	129.6
LXL04_022123	`PF19055.7`	ABC2_membrane_7	1047	1078	1.6e-15	57.7
LXL04_022123	`PF01061.30`	ABC2_membrane	1163	1376	1e-102	342.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7PC87`	Arabidopsis thaliana	ABC transporter G family member 34	67.088%	Swiss-Prot	strong database homology
`Q7PC84`	Arabidopsis thaliana	ABC transporter G family member 39	66.435%	Swiss-Prot	strong database homology
`Q8GU84`	Oryza sativa subsp. japonica	ABC transporter G family member 48	57.805%	Swiss-Prot	strong database homology
`Q8GU86`	Oryza sativa subsp. japonica	ABC transporter G family member 43	58.156%	Swiss-Prot	strong database homology

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