LXL04_022052 | RubberDandelionOmics

Gene overview

LXL04_022052

Reference: OH-1004 Chr: Chr04 Coordinates: 144053106-144056489 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2625 bp · LXL04_022052|LXL04_022052|OH1004|cDNA

ATGGGTTCACCTGAACGTGTAAAGGCCTCTGTGAAAAGGGACATAGAAGACAGCTCAGGTTCTAGAAGTGACAGAGCCCGCGACCATGAAACAAGTGAATCAGATGAGAGGAGAAAACGAAGGTCAGGAAAGTCAAAGCATTCcggaagtggagaagaagacaacagtgcaagaagaagaagcagtGAGGAAAAATACGAGAGCCGAAAAAGGACAGGTGGCAGCAAGGCATTGAGCGATGAAGACGAATACGAGTCAAG...

CDS

Download CDS FASTA

2625 bp · LXL04_022052|LXL04_022052|OH1004|CDS

ATGGGTTCACCTGAACGTGTAAAGGCCTCTGTGAAAAGGGACATAGAAGACAGCTCAGGTTCTAGAAGTGACAGAGCCCGCGACCATGAAACAAGTGAATCAGATGAGAGGAGAAAACGAAGGTCAGGAAAGTCAAAGCATTCCGGAAGTGGAGAAGAAGACAACAGTGCAAGAAGAAGAAGCAGTGAGGAAAAATACGAGAGCCGAAAAAGGACAGGTGGCAGCAAGGCATTGAGCGATGAAGACGAATACGAGTCAAG...

Protein

Download Protein FASTA

874 aa · LXL04_022052|LXL04_022052|OH1004|PROTEIN

MGSPERVKASVKRDIEDSSGSRSDRARDHETSESDERRKRRSGKSKHSGSGEEDNSARRRSSEEKYESRKRTGGSKALSDEDEYESRSKHMRKKQEESALETLSNWYQDGEGENRHDGGGGGERSERRKSTPKVKDDSDLEKDLKNSQRKEKSQRKRWDDADTVNNSEETSEKNQEDNEKADDDDDDVTRGKKDIDRASRKEKDSYKDDRSKGRDDNWQKRRQEKEKDDDAPYDYTRDWESPSSQRRGSGPRDRAETGGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022052`
TK1151 ID	TkA05G443030
OH-1004 ID	LXL04_022052
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022052

Location Chr04:144053106-144056489 (-)

Description Similar to MTB: N6-adenosine-methyltransferase non-catalytic subunit MTB

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g09980`	Probable non-catalytic subunit of the N6-methyltransferase complex, a multiprotein complex that mediates N6-methyladenosine (m6A) methylation at the 5'-[AG]GAC-3' consensus sites of some mRNAs.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022052 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0001510 RNA methylation Biological Process

GO:0006397 mRNA processing Biological Process

GO:0007283 spermatogenesis Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016556 mRNA modification Biological Process

GO:0019827 stem cell population maintenance Biological Process

GO:0061157 mRNA destabilization Biological Process

GO:0005634 nucleus Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0036396 RNA N6-methyladenosine methyltransferase complex Cellular Component

GO:0001734 mRNA m(6)A methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT4G09980

gga:422684

xla:414467

xtr:493301

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.945

Rank 1 · LXL04_022052 · OH-1004

Cytoplasm0.169

Rank 2 · LXL04_022052 · OH-1004

Cell membrane0.024

Rank 3 · LXL04_022052 · OH-1004

Mitochondrion0.015

Rank 4 · LXL04_022052 · OH-1004

Endoplasmic reticulum0.010

Rank 5 · LXL04_022052 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05063.21MT-A70543-720 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022052	`PF05063.21`	MT-A70	543	720	2.2e-51	174.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94AI4`	Arabidopsis thaliana	N6-adenosine-methyltransferase non-catalytic subunit MTB	68.135%	Swiss-Prot	weak database homology

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