Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1101 bp · LXL04_021987|LXL04_021987|OH1004|cDNA
ATGCCTCCCAAACAATCGAAATCCGAGGTAGCAAAGAAGCAGAAAGTGGTAGAAGACAAGACATTCGGGCttaagaacaagaacaagagCAAAAACGTTCAAAAATATGTGCAGGCACTTCAGCAGAATGTTGTACCCAAACCCGATGCGTCCAAACTCGCTGCTAAGAAAAAGAAGGACGAAGAAAAAGCTAGAGAGAAGGAATTGAATGAGTTGTTTAAGATTGCTGTCGTTCAACCTAAAGTACCTCCCGGTGTGGA...
1101 bp · LXL04_021987|LXL04_021987|OH1004|CDS
ATGCCTCCCAAACAATCGAAATCCGAGGTAGCAAAGAAGCAGAAAGTGGTAGAAGACAAGACATTCGGGCTTAAGAACAAGAACAAGAGCAAAAACGTTCAAAAATATGTGCAGGCACTTCAGCAGAATGTTGTACCCAAACCCGATGCGTCCAAACTCGCTGCTAAGAAAAAGAAGGACGAAGAAAAAGCTAGAGAGAAGGAATTGAATGAGTTGTTTAAGATTGCTGTCGTTCAACCTAAAGTACCTCCCGGTGTGGA...
Protein
Download Protein FASTA366 aa · LXL04_021987|LXL04_021987|OH1004|PROTEIN
MPPKQSKSEVAKKQKVVEDKTFGLKNKNKSKNVQKYVQALQQNVVPKPDASKLAAKKKKDEEKAREKELNELFKIAVVQPKVPPGVDPKSILCEFFKAGQCAKGFKCKFSHDLNVQRKGEKIDIFSDKRDGEDTMEEWDQEMLEKVIESKGKEYNQNKPTDIVCKHFLDAVEKKQYGWFWHCPNGNKECHYRHALPPGYILKSQMKALLEEEANKLAIEDEIEDQRAKVKTTTPMTTDLFMDWKQKKLDEKEAGMAAQRA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021987 |
|---|---|
| TK1151 ID | TkA05G437430 |
| OH-1004 ID | LXL04_021987 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 79.300 |
| Protein coverage (%) | TK1151 90.000 / OH-1004 44.809Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021987 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:141975883-141977705 (-) | ||||||||||||
| Description | Similar to Os01g0834700: Zinc finger CCCH domain-containing protein 11 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0002181 cytoplasmic translation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0003677 DNA binding Molecular Function GO:0003729 mRNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT2G20280 cel:CELE_F27D4.4 ddi:DDB_G0292410 dosa:Os01g0834700 sce:YOR091W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF16543.11DFRP_C215-294 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021987 | PF16543.11 | DFRP_C | 215 | 294 | 1.1e-16 | 61.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.