LXL04_021942 | RubberDandelionOmics

Gene overview

LXL04_021942

Reference: OH-1004 Chr: Chr04 Coordinates: 140776046-140788394 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7602 bp · LXL04_021942|LXL04_021942|OH1004|cDNA

ATGGATCGTGATACATGGATGTATGAAATATCACGTGCTACCAAAGGGTTTTTAGCCGGTTTGAAAGATTTTCTTAAGATCGCAGAGGATAATCGAAAGAGTAAAGGAGAAAGTCATATATGGTGTCCTTGTAAATTATGTCAGAATTGTCAAAAGTTTATTGATTCTAAAATAATACAAGGACATCTAATATGTGAAGGGTTTATGGGTGGGTATACATGTTGGTCTCGACATGGTGAACTATTGATTGACGATAATAC...

CDS

Download CDS FASTA

7602 bp · LXL04_021942|LXL04_021942|OH1004|CDS

ATGGATCGTGATACATGGATGTATGAAATATCACGTGCTACCAAAGGGTTTTTAGCCGGTTTGAAAGATTTTCTTAAGATCGCAGAGGATAATCGAAAGAGTAAAGGAGAAAGTCATATATGGTGTCCTTGTAAATTATGTCAGAATTGTCAAAAGTTTATTGATTCTAAAATAATACAAGGACATCTAATATGTGAAGGGTTTATGGGTGGGTATACATGTTGGTCTCGACATGGTGAACTATTGATTGACGATAATAC...

Protein

Download Protein FASTA

2533 aa · LXL04_021942|LXL04_021942|OH1004|PROTEIN

MDRDTWMYEISRATKGFLAGLKDFLKIAEDNRKSKGESHIWCPCKLCQNCQKFIDSKIIQGHLICEGFMGGYTCWSRHGELLIDDNTSVPKCKRNDDDTSHLDDDNHDGLEDMLHDVEDNVAEKDYEKFQQLFVDSEKPVYPGCTKFTKLSTVLRLFNFKANNGWSDKSFTGLLEFLHELLPEGNEIPISLYQAKKLLCPMGMEIERIHACPNDCILYRNEYADLHECVTCGTSRYKQKNDTEKNEDVTKNGPPAKLLWY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021942`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021942

Location Chr04:140776046-140788394 (+)

Description Similar to HSP70-1: Heat shock 70 kDa protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02500`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Physiological and molecular assessment of altered expression of Hsc70-1 in Arabidopsis. Evidence for pleiotropic consequences.2003 · DOI: 10.1104/pp.102.019398 Interaction between SGT1 and cytosolic/nuclear HSC70 chaperones regulates Arabidopsis immune responses.2007 · DOI: 10.1105/tpc.107.051896 WPP-domain proteins mimic the activity of the HSC70-1 chaperone in preventing mistargeting of RanGAP1-anchoring protein WIT1.2009 · DOI: 10.1104/pp.109.143404 The cytosolic/nuclear HSC70 and HSP90 molecular chaperones are important for stomatal closure and modulate abscisic acid-dependent physiological responses in Arabidopsis.2011 · DOI: 10.1104/pp.111.174425
`At5g02490`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021942 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006457 protein folding Biological Process

GO:0006950 response to stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009615 response to virus Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0010286 heat acclimation Biological Process

GO:0042026 protein refolding Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0090332 stomatal closure Biological Process

KEGG gene cross-reference

ath:AT5G02490

ath:AT5G02500

sly:101247772

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.914

Rank 1 · LXL04_021942 · OH-1004

Cytoplasm0.157

Rank 2 · LXL04_021942 · OH-1004

Cell membrane0.022

Rank 3 · LXL04_021942 · OH-1004

Mitochondrion0.022

Rank 4 · LXL04_021942 · OH-1004

Extracellular0.016

Rank 5 · LXL04_021942 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13963.12Transpos_assoc5-80 aa

PF02992.21Transposase_21290-502 aa

PF13960.12DUF4218680-785 aa

PF13952.12DUF4216953-1016 aa

PF26133.1DUF80391480-1569 aa

PF02902.26Peptidase_C481761-1858 aa

PF00012.27HSP701893-2502 aa

PF06723.20MreB_Mbl2026-2264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021942	`PF13963.12`	Transpos_assoc	5	80	2.7e-20	73.0
LXL04_021942	`PF02992.21`	Transposase_21	290	502	3.5e-86	288.5
LXL04_021942	`PF13960.12`	DUF4218	680	785	1.6e-34	118.9
LXL04_021942	`PF13952.12`	DUF4216	953	1016	1.4e-15	58.3
LXL04_021942	`PF26133.1`	DUF8039	1480	1569	1.9e-25	89.9
LXL04_021942	`PF02902.26`	Peptidase_C48	1761	1858	3.3e-08	34.3
LXL04_021942	`PF00012.27`	HSP70	1893	2502	9.6e-259	860.3
LXL04_021942	`PF06723.20`	MreB_Mbl	2026	2264	2.2e-14	53.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P22953`	Arabidopsis thaliana	Heat shock 70 kDa protein 1	88.633%	Swiss-Prot	weak database homology
`P22954`	Arabidopsis thaliana	Heat shock 70 kDa protein 2	88.361%	Swiss-Prot	weak database homology

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