LXL04_021903 | RubberDandelionOmics

Gene overview

LXL04_021903

Reference: OH-1004 Chr: Chr04 Coordinates: 139934120-139939621 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2214 bp · LXL04_021903|LXL04_021903|OH1004|cDNA

ATGGACGCAATCGATCCAACTCGCGGATTTCTTAAAGATGTTAGGCGTATCGTTATCAAGGTTGGAACAGCTGTTGTCACTCGAGATGATGGACGACTTGCTCTCGGAAGATTAGGAGCACTTTGTGAGCAGATTCAAGCACTAAATTCTCAAGGATTTGAGGTTATCCTTGTGTCATCTGGTGCTGTTGGAGCCGGTAGACAAAGACTTAGATACAGGAAACTAATCAACAGCAGCTTTGCGGATCTTCAGAAACCACA...

CDS

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2214 bp · LXL04_021903|LXL04_021903|OH1004|CDS

ATGGACGCAATCGATCCAACTCGCGGATTTCTTAAAGATGTTAGGCGTATCGTTATCAAGGTTGGAACAGCTGTTGTCACTCGAGATGATGGACGACTTGCTCTCGGAAGATTAGGAGCACTTTGTGAGCAGATTCAAGCACTAAATTCTCAAGGATTTGAGGTTATCCTTGTGTCATCTGGTGCTGTTGGAGCCGGTAGACAAAGACTTAGATACAGGAAACTAATCAACAGCAGCTTTGCGGATCTTCAGAAACCACA...

Protein

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737 aa · LXL04_021903|LXL04_021903|OH1004|PROTEIN

MDAIDPTRGFLKDVRRIVIKVGTAVVTRDDGRLALGRLGALCEQIQALNSQGFEVILVSSGAVGAGRQRLRYRKLINSSFADLQKPQAELDGKACAAVGQNGLMALYDTLFSQLDVTSAQLLVTDNDFRSSEFRKQLTETVDSLLSLKVIPVFNENDSISTRRAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVDGLYSGPPSDPQSKLIYTYIKEKLENTITFGDKSRLGRGGMTAKVKAAVYASQAGIPVVITS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021903`
TK1151 ID	TkAUNG085910
OH-1004 ID	LXL04_021903
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	96.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021903

Location Chr04:139934120-139939621 (+)

Description Similar to Delta-1-pyrroline-5-carboxylate synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55610`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release
`At2g39800`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0455500`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021903 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0048364 root development Biological Process

GO:0055129 L-proline biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G39800

ath:AT3G55610

dosa:Os05g0455500

osa:4338979

sly:544281

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.635

Rank 1 · LXL04_021903 · OH-1004

Nucleus0.278

Rank 2 · LXL04_021903 · OH-1004

Mitochondrion0.117

Rank 3 · LXL04_021903 · OH-1004

Peroxisome0.100

Rank 4 · LXL04_021903 · OH-1004

Cell membrane0.060

Rank 5 · LXL04_021903 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00696.34AA_kinase16-260 aa

PF00171.28Aldedh377-566 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021903	`PF00696.34`	AA_kinase	16	260	3e-40	139.1
LXL04_021903	`PF00171.28`	Aldedh	377	566	2.9e-13	49.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P54888`	Arabidopsis thaliana	Delta-1-pyrroline-5-carboxylate synthase B	72.690%	Swiss-Prot	strong database homology
`P54887`	Arabidopsis thaliana	Delta-1-pyrroline-5-carboxylate synthase A	72.442%	Swiss-Prot	strong database homology
`O04226`	Oryza sativa subsp. japonica	Delta-1-pyrroline-5-carboxylate synthase 1	72.033%	Swiss-Prot	strong database homology

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