Gene Card
Gene overview
cDNA / CDS / Protein Sequences
864 bp · LXL04_021762|LXL04_021762|OH1004|cDNA
ATGGAGGCCCTAATCGCATCTTACGGAGACACttcttccgattcggaatccGATTCTCAACCGCCGATTGCCGCCTCCGATGACAGCCACTCACAACCGCCATCCATTCTTCCTCCGCCGCCAATCGACCTTCTCAACCCTCTCAATTCCTCTGGAACTTTTGATTATTTGGAGCGTAATACCGCCAGTAGAATTCGCAACTTCCCTCACATCCAAGGCAATTACGCATTACATGTTTACATTCCAGTATTTATACCATC...
864 bp · LXL04_021762|LXL04_021762|OH1004|CDS
ATGGAGGCCCTAATCGCATCTTACGGAGACACTTCTTCCGATTCGGAATCCGATTCTCAACCGCCGATTGCCGCCTCCGATGACAGCCACTCACAACCGCCATCCATTCTTCCTCCGCCGCCAATCGACCTTCTCAACCCTCTCAATTCCTCTGGAACTTTTGATTATTTGGAGCGTAATACCGCCAGTAGAATTCGCAACTTCCCTCACATCCAAGGCAATTACGCATTACATGTTTACATTCCAGTATTTATACCATC...
Protein
Download Protein FASTA287 aa · LXL04_021762|LXL04_021762|OH1004|PROTEIN
MEALIASYGDTSSDSESDSQPPIAASDDSHSQPPSILPPPPIDLLNPLNSSGTFDYLERNTASRIRNFPHIQGNYALHVYIPVFIPSERKKELAQFLKKAASLVPDLHVVDIDVPLSVLIKDEEKLIQAALGREFHISLGRTVPIRVHQIDSMVAMLRQKLQFQKRYLIDFNKWEVFMNDDQTRTFLSVENTTRGLPEVTKQIQAVNEVYRLHNLPEFYKDPRPHISIAWGVGDISQSAKRVVEGEMRKYVDNGGVLSTK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021762 |
|---|---|
| TK1151 ID | TkA05G419370 |
| OH-1004 ID | LXL04_021762 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021762 |
|---|---|
| Location | Chr04:136539952-136541046 (+) |
| Description | Similar to Usb1: U6 snRNA phosphodiesterase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0008380 RNA splicing Biological Process GO:0034472 snRNA 3'-end processing Biological Process GO:0034477 U6 snRNA 3'-end processing Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0045171 intercellular bridge Cellular Component GO:0000175 3'-5'-RNA exonuclease activity Molecular Function GO:0016829 lyase activity Molecular Function GO:1990838 poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends Molecular Function |
| KEGG gene cross-reference | dre:445066 hsa:79650 mmu:101985 rno:307643 xla:379166 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09749.16HVSL38-282 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021762 | PF09749.16 | HVSL | 38 | 282 | 1.9e-56 | 191.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.