LXL04_021703 | RubberDandelionOmics

Gene overview

LXL04_021703

Reference: OH-1004 Chr: Chr04 Coordinates: 135596311-135603975 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1617 bp · LXL04_021703|LXL04_021703|OH1004|cDNA

ATGACGGAGCTTGAATGTAGCCGCTGTTTTCCGATTTCGATTCAAGTTCTTCAATTTCTTCAAATTCATCGTCGGAAGAATCGCAAAACGGATTGTTATTCTTATAGTGATTCGGAGAATAAGAAGACGAATAGCGAGACGAAGAATCCAACAATGGCGTCGATGAAAATTCCCCAAACCACCAACTGCAAAAACGGCTGTACAATGTGTTTCAACGACTACCATCTCATCAACGAAAGGAGCAAGTTGCCGAGAATAAT...

CDS

Download CDS FASTA

1617 bp · LXL04_021703|LXL04_021703|OH1004|CDS

ATGACGGAGCTTGAATGTAGCCGCTGTTTTCCGATTTCGATTCAAGTTCTTCAATTTCTTCAAATTCATCGTCGGAAGAATCGCAAAACGGATTGTTATTCTTATAGTGATTCGGAGAATAAGAAGACGAATAGCGAGACGAAGAATCCAACAATGGCGTCGATGAAAATTCCCCAAACCACCAACTGCAAAAACGGCTGTACAATGTGTTTCAACGACTACCATCTCATCAACGAAAGGAGCAAGTTGCCGAGAATAAT...

Protein

Download Protein FASTA

538 aa · LXL04_021703|LXL04_021703|OH1004|PROTEIN

MTELECSRCFPISIQVLQFLQIHRRKNRKTDCYSYSDSENKKTNSETKNPTMASMKIPQTTNCKNGCTMCFNDYHLINERSKLPRIITQKTSNNALITCGLFNHLGRVVKQFWPSSIDDNDEDDEVNDLKNNSCEYFCEKKVGFFGRRCDCGGRFCGVHRLPEEHACKYTAVRDAIEFLNEKSGNEEIKNPSMASVTEIPQTTACKNGCGFSGKSPARTKNLCSMCFNDYHLINERSKLPRIITQKTSNNALITCGLFNH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021703`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021703

Location Chr04:135596311-135603975 (+)

Description Similar to SAP7: Zinc finger A20 and AN1 domain-containing stress-associated protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12040`	May be involved in environmental stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0168800`	May be involved in environmental stress response.	No verified direct reference in this release
`Os06g0612800`	May be involved in environmental stress response.	No verified direct reference in this release
`UniProt: A2YEZ6`	May be involved in environmental stress response.	No verified direct reference in this release
`Os03g0792900`	May be involved in environmental stress response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021703 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G12040

dosa:Os07g0168800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.642

Rank 1 · LXL04_021703 · OH-1004

Cytoplasm0.379

Rank 2 · LXL04_021703 · OH-1004

Mitochondrion0.050

Rank 3 · LXL04_021703 · OH-1004

Cell membrane0.037

Rank 4 · LXL04_021703 · OH-1004

Endoplasmic reticulum0.025

Rank 5 · LXL04_021703 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01428.24zf-AN1134-169 aa

PF01428.24zf-AN1290-325 aa

PF01428.24zf-AN1474-509 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021703	`PF01428.24`	zf-AN1	134	169	3.8e-21	75.6
LXL04_021703	`PF01428.24`	zf-AN1	290	325	3.8e-21	75.6
LXL04_021703	`PF01428.24`	zf-AN1	474	509	3.8e-21	75.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZ69`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	35.220%	Swiss-Prot	weak database homology
`Q7Y1W9`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	30.065%	Swiss-Prot	weak database homology
`A3BDI8`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	32.667%	Swiss-Prot	weak database homology
`A2YEZ6`	Oryza sativa subsp. indica	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	32.667%	Swiss-Prot	weak database homology
`Q852K5`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 6	30.496%	Swiss-Prot	weak database homology

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