LXL04_021561 | RubberDandelionOmics

Gene overview

LXL04_021561

Reference: OH-1004 Chr: Chr04 Coordinates: 132397684-132399102 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

510 bp · LXL04_021561|LXL04_021561|OH1004|cDNA

ATGGAACTGCTGACCCAAGATGCAACTGCTCATTATAATCGCTATATCGCTGCAGATTCTGAAATTCACAAGCAATTATTTCAAATCCTTAATCTCGATTTCTGGAGTGTTAGGCGACGGCCTCTGACTGGTAAGTTCAATTCGATATTTttGGCAAAGCCGCAAAGGGAAGGGTCCTCAATCTCTATTTCAGTAACAGtTAGAAGAAGGACAAGTAAAGATGCAGTCACAAGAAATTCCAGCAACTTATCAGCTGCAGG...

CDS

Download CDS FASTA

510 bp · LXL04_021561|LXL04_021561|OH1004|CDS

ATGGAACTGCTGACCCAAGATGCAACTGCTCATTATAATCGCTATATCGCTGCAGATTCTGAAATTCACAAGCAATTATTTCAAATCCTTAATCTCGATTTCTGGAGTGTTAGGCGACGGCCTCTGACTGGTAAGTTCAATTCGATATTTTTGGCAAAGCCGCAAAGGGAAGGGTCCTCAATCTCTATTTCAGTAACAGTTAGAAGAAGGACAAGTAAAGATGCAGTCACAAGAAATTCCAGCAACTTATCAGCTGCAGG...

Protein

Download Protein FASTA

169 aa · LXL04_021561|LXL04_021561|OH1004|PROTEIN

MELLTQDATAHYNRYIAADSEIHKQLFQILNLDFWSVRRRPLTGKFNSIFLAKPQREGSSISISVTVRRRTSKDAVTRNSSNLSAAGSIITESTQVGDLNGGKVGVISIDQMDLLVEQVKMLAGEIAFSSSTMKRLVEQSANDPESSKTQEIEEKRKANEGHGETDYCK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021561`
TK1151 ID	TkA05G405960
OH-1004 ID	LXL04_021561
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	93.900
Protein coverage (%)	TK1151 92.453 / OH-1004 54.438 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021561

Location Chr04:132397684-132399102 (-)

Description Similar to KIN7D: Kinesin-like protein KIN-7D, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39050`	Kinesin-like protein KIN-7D, mitochondrial.	No verified direct reference in this release
`At2g21380`	Kinesin-like protein KIN-7M, chloroplastic.	No verified direct reference in this release
`At1g21730`	Kinesin-like protein KIN-7C, mitochondrial.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0512800`	Kinesin-like protein KIN-7K, chloroplastic.	No verified direct reference in this release
`Os04g0434600`	Kinesin-like protein KIN-7E, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021561 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G21730

ath:AT2G21380

ath:AT4G39050

osa:9271714

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.645

Rank 1 · LXL04_021561 · OH-1004

Cytoplasm0.329

Rank 2 · LXL04_021561 · OH-1004

Cell membrane0.055

Rank 3 · LXL04_021561 · OH-1004

Mitochondrion0.047

Rank 4 · LXL04_021561 · OH-1004

Endoplasmic reticulum0.028

Rank 5 · LXL04_021561 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W5R5`	Arabidopsis thaliana	Kinesin-like protein KIN-7D, mitochondrial	53.333%	Swiss-Prot	weak database homology
`Q9SJU0`	Arabidopsis thaliana	Kinesin-like protein KIN-7M, chloroplastic	58.333%	Swiss-Prot	weak database homology
`Q8W5R6`	Arabidopsis thaliana	Kinesin-like protein KIN-7C, mitochondrial	44.286%	Swiss-Prot	weak database homology
`Q9FW70`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7K, chloroplastic	61.017%	Swiss-Prot	weak database homology
`B9FFA3`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7E, chloroplastic	50.000%	Swiss-Prot	weak database homology

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