LXL04_021499 | RubberDandelionOmics

Gene overview

LXL04_021499

Reference: OH-1004 Chr: Chr04 Coordinates: 131283838-131286204 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_021499|LXL04_021499|OH1004|cDNA

ATGAATCGGCGTACAGCTTTCGCTCTGTTCCTCTTCTGCCTCTTCGGTTTCCTTGCTGCATCTCGCGTTTCAGCTAAGGACCTCTCTGCTGAAAATGATAACGGAGATTCAGCTGGATCCATTATAGATCTGGGACGGCGGAGTAAAGTGGTTGTAAACAGACTAAAAAACAATGTCATAGGTGACAAGATTGATCCAAAGGCTGTACTTAATCTGGATTCTGGTCTTGGTGTTTTTGATGCACTCTTTGCTAGTTTGTC...

CDS

Download CDS FASTA

876 bp · LXL04_021499|LXL04_021499|OH1004|CDS

ATGAATCGGCGTACAGCTTTCGCTCTGTTCCTCTTCTGCCTCTTCGGTTTCCTTGCTGCATCTCGCGTTTCAGCTAAGGACCTCTCTGCTGAAAATGATAACGGAGATTCAGCTGGATCCATTATAGATCTGGGACGGCGGAGTAAAGTGGTTGTAAACAGACTAAAAAACAATGTCATAGGTGACAAGATTGATCCAAAGGCTGTACTTAATCTGGATTCTGGTCTTGGTGTTTTTGATGCACTCTTTGCTAGTTTGTC...

Protein

Download Protein FASTA

291 aa · LXL04_021499|LXL04_021499|OH1004|PROTEIN

MNRRTAFALFLFCLFGFLAASRVSAKDLSAENDNGDSAGSIIDLGRRSKVVVNRLKNNVIGDKIDPKAVLNLDSGLGVFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATGMFLYAFFGLRLLYIAWRSSSKASQKKEMEEVEEKLESGQGKTTVRRFFSRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSIAVIGGSM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021499`
TK1151 ID	TkA05G400860
OH-1004 ID	LXL04_021499
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021499

Location Chr04:131283838-131286204 (+)

Description Similar to Os11g0472500: GDT1-like protein 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36290`	GDT1-like protein 3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0472500`	GDT1-like protein 3.	No verified direct reference in this release
`UniProt: A2ZE50`	GDT1-like protein 3.	No verified direct reference in this release
`UniProt: A2YXC7`	GDT1-like protein 4.	No verified direct reference in this release
`Os08g0528500`	GDT1-like protein 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021499 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006828 manganese ion transport Biological Process

GO:0032468 Golgi calcium ion homeostasis Biological Process

GO:0032472 Golgi calcium ion transport Biological Process

GO:0070588 calcium ion transmembrane transport Biological Process

GO:0071421 manganese ion transmembrane transport Biological Process

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:1990676 Golgi trans cisterna membrane Cellular Component

GO:0005384 manganese ion transmembrane transporter activity Molecular Function

GO:0005388 P-type calcium transporter activity Molecular Function

GO:0015085 calcium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G36290

dosa:Os08g0528500

dosa:Os11g0472500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.358

Rank 1 · LXL04_021499 · OH-1004

Endoplasmic reticulum0.276

Rank 2 · LXL04_021499 · OH-1004

Lysosome / Vacuole0.205

Rank 3 · LXL04_021499 · OH-1004

Cytoplasm0.123

Rank 4 · LXL04_021499 · OH-1004

Cell membrane0.083

Rank 5 · LXL04_021499 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01169.26GDT181-168 aa

PF01169.26GDT1207-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021499	`PF01169.26`	GDT1	81	168	2.2e-42	143.9
LXL04_021499	`PF01169.26`	GDT1	207	284	2.2e-42	143.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Y38`	Arabidopsis thaliana	GDT1-like protein 3	75.714%	Swiss-Prot	strong database homology
`Q2R4J1`	Oryza sativa subsp. japonica	GDT1-like protein 3	78.846%	Swiss-Prot	strong database homology
`A2ZE50`	Oryza sativa subsp. indica	GDT1-like protein 3	78.846%	Swiss-Prot	strong database homology
`A2YXC7`	Oryza sativa subsp. indica	GDT1-like protein 4	77.820%	Swiss-Prot	strong database homology
`Q6ZIB9`	Oryza sativa subsp. japonica	GDT1-like protein 4	77.820%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card