LXL04_021383 | RubberDandelionOmics

Gene overview

LXL04_021383

Reference: OH-1004 Chr: Chr04 Coordinates: 128566744-128567907 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

702 bp · LXL04_021383|LXL04_021383|OH1004|cDNA

ATGGATATCTTCTCGTACTTCACCTCAGAAATCAATACAGAGAACAGGATGGATTTTGATGACGACGATTTCGAAGATGCTGAAACAGGAACCGCTCTTTCTTCGATTGCGGATGCATTTGAGGAATTATCCGATTTGATAAAAAAGGATAAGAGTAATGGAGCTTCATTTGAGCTGCGGTTGAAGCCTTTTTGCGATGCCTGTTCTCTAGTCTCTGTACTATTTGGTTCCCTTGGCATCGCTTTCAAATTTGCCGAGAT...

CDS

Download CDS FASTA

702 bp · LXL04_021383|LXL04_021383|OH1004|CDS

ATGGATATCTTCTCGTACTTCACCTCAGAAATCAATACAGAGAACAGGATGGATTTTGATGACGACGATTTCGAAGATGCTGAAACAGGAACCGCTCTTTCTTCGATTGCGGATGCATTTGAGGAATTATCCGATTTGATAAAAAAGGATAAGAGTAATGGAGCTTCATTTGAGCTGCGGTTGAAGCCTTTTTGCGATGCCTGTTCTCTAGTCTCTGTACTATTTGGTTCCCTTGGCATCGCTTTCAAATTTGCCGAGAT...

Protein

Download Protein FASTA

233 aa · LXL04_021383|LXL04_021383|OH1004|PROTEIN

MDIFSYFTSEINTENRMDFDDDDFEDAETGTALSSIADAFEELSDLIKKDKSNGASFELRLKPFCDACSLVSVLFGSLGIAFKFAEMEYTSKVRDLSDAASLYGTLSKVVDYDVKSDTVQSAESLTRKLRRVRQGLDLIRELFQNFLSTDEYSLKEAASTAYKQVCAPYHTWAVRTAVSAGMCALPTRDQLLLNLNESDESAESEMRRYIKASLPVINYIDNLYTSRGITLDW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021383`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021383

Location Chr04:128566744-128567907 (+)

Description Similar to At4g39670: ACD11 homolog protein

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39670`	ACD11 homolog protein.	No verified direct reference in this release
`At2g34690`	Exhibits selective intermembrane transfer of ceramide-1-phosphate (C1P) and phytoceramide-1-phosphate.	Knockout of Arabidopsis accelerated-cell-death11 encoding a sphingosine transfer protein causes activation of programmed cell death and defense.2002 · DOI: 10.1101/gad.218202 Human GLTP and mutant forms of ACD11 suppress cell death in the Arabidopsis acd11 mutant.2008 · DOI: 10.1111/j.1742-4658.2008.06584.x Identification of proteins interacting with Arabidopsis ACD11.2009 · DOI: 10.1016/j.jplph.2008.08.003 Arabidopsis accelerated cell death 11, ACD11, is a ceramide-1-phosphate transfer protein and intermediary regulator of phytoceramide levels.2014 · DOI: 10.1016/j.celrep.2013.12.023 Phosphatidylserine Stimulates Ceramide 1-Phosphate (C1P) Intermembrane Transfer by C1P Transfer Proteins.2017 · DOI: 10.1074/jbc.m116.760256

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021383 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009751 response to salicylic acid Biological Process

GO:0010507 negative regulation of autophagy Biological Process

GO:0015031 protein transport Biological Process

GO:0032691 negative regulation of interleukin-1 beta production Biological Process

GO:0035621 ER to Golgi ceramide transport Biological Process

GO:0035627 ceramide transport Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0120009 intermembrane lipid transfer Biological Process

GO:1902389 ceramide 1-phosphate transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005640 nuclear outer membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G34690

ath:AT4G39670

dre:492502

dre:791641

hsa:80772

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.635

Rank 1 · LXL04_021383 · OH-1004

Nucleus0.284

Rank 2 · LXL04_021383 · OH-1004

Cell membrane0.127

Rank 3 · LXL04_021383 · OH-1004

Golgi apparatus0.112

Rank 4 · LXL04_021383 · OH-1004

Endoplasmic reticulum0.091

Rank 5 · LXL04_021383 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08718.17GLTP60-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021383	`PF08718.17`	GLTP	60	196	2.7e-37	128.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L7U7`	Arabidopsis thaliana	ACD11 homolog protein	60.096%	Swiss-Prot	strong database homology
`O64587`	Arabidopsis thaliana	Accelerated cell death 11	44.976%	Swiss-Prot	moderate database homology

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