LXL04_021291 | RubberDandelionOmics

Gene overview

LXL04_021291

Reference: OH-1004 Chr: Chr04 Coordinates: 126720079-126732897 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3126 bp · LXL04_021291|LXL04_021291|OH1004|cDNA

atgcctcccaagatgaccccagctgcgattcgacagatgatcgccaccgaggtggccggggctgttgccgacgaggtgagccgagccgtatccgaggccatcccggagatcatcacggcgatccgtgagcagctcgagactgtgatAGACGAGCGGGTGATGGCTGCCATTGGAGCGacacagcagcatcaccagcgagggttctcctacaaggagttctcagcgtgctctcctcctctgttCCAGGGGAGCACTgaccc...

CDS

Download CDS FASTA

3126 bp · LXL04_021291|LXL04_021291|OH1004|CDS

ATGCCTCCCAAGATGACCCCAGCTGCGATTCGACAGATGATCGCCACCGAGGTGGCCGGGGCTGTTGCCGACGAGGTGAGCCGAGCCGTATCCGAGGCCATCCCGGAGATCATCACGGCGATCCGTGAGCAGCTCGAGACTGTGATAGACGAGCGGGTGATGGCTGCCATTGGAGCGACACAGCAGCATCACCAGCGAGGGTTCTCCTACAAGGAGTTCTCAGCGTGCTCTCCTCCTCTGTTCCAGGGGAGCACTGACCC...

Protein

Download Protein FASTA

1041 aa · LXL04_021291|LXL04_021291|OH1004|PROTEIN

MPPKMTPAAIRQMIATEVAGAVADEVSRAVSEAIPEIITAIREQLETVIDERVMAAIGATQQHHQRGFSYKEFSACSPPLFQGSTDPITCMRWVSDVEGAFLTIISSAKDWWTTWTKAMTNPEISEMPWEDFVTRFRTQYVPQVEMDRLAREFLTMEQTTESIPELNRKFNEMALFCPQYAADEGMKMARYTQMLRTDIREFVVAYPRTSLAELMDAARRREMEVEMQVQKRKAAQALIPASAGSKKGKTSDRHTELGSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021291`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021291

Location Chr04:126720079-126732897 (-)

Description Similar to CALS9: Callose synthase 9

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07160`	Involved in sporophytic and gametophytic development.	Dual function of Arabidopsis glucan synthase-like genes GSL8 and GSL10 in male gametophyte development and plant growth.2008 · DOI: 10.1111/j.1365-313x.2008.03462.x
`At2g36850`	Involved in sporophytic and gametophytic development.	Dual function of Arabidopsis glucan synthase-like genes GSL8 and GSL10 in male gametophyte development and plant growth.2008 · DOI: 10.1111/j.1365-313x.2008.03462.x Dysregulation of cell-to-cell connectivity and stomatal patterning by loss-of-function mutation in Arabidopsis chorus (glucan synthase-like 8).2010 · DOI: 10.1242/dev.049197
`At5g13000`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release
`At2g31960`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021291 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006075 (1->3)-beta-D-glucan biosynthetic process Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009555 pollen development Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0009846 pollen germination Biological Process

GO:0048589 developmental growth Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0052543 callose deposition in cell wall Biological Process

GO:0055047 generative cell mitosis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:2000767 positive regulation of cytoplasmic translation Biological Process

KEGG gene cross-reference

ath:AT2G31960

ath:AT2G36850

ath:AT3G07160

ath:AT5G13000

sce:YNL255C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.490

Rank 1 · LXL04_021291 · OH-1004

Cytoplasm0.345

Rank 2 · LXL04_021291 · OH-1004

Mitochondrion0.096

Rank 3 · LXL04_021291 · OH-1004

Cell membrane0.096

Rank 4 · LXL04_021291 · OH-1004

Endoplasmic reticulum0.054

Rank 5 · LXL04_021291 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19259.5Ty3_capsid105-220 aa

PF00098.29zf-CCHC276-290 aa

PF00098.29zf-CCHC295-311 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021291	`PF19259.5`	Ty3_capsid	105	220	7.7e-07	29.4
LXL04_021291	`PF00098.29`	zf-CCHC	276	290	5.8e-10	39.5
LXL04_021291	`PF00098.29`	zf-CCHC	295	311	5.8e-10	39.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFU6`	Arabidopsis thaliana	Callose synthase 9	53.725%	Swiss-Prot	weak database homology
`Q9SJM0`	Arabidopsis thaliana	Callose synthase 10	39.662%	Swiss-Prot	weak database homology
`Q9LXT9`	Arabidopsis thaliana	Callose synthase 3	28.485%	Swiss-Prot	weak database homology
`Q9SL03`	Arabidopsis thaliana	Callose synthase 2	27.411%	Swiss-Prot	weak database homology

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