LXL04_021276 | RubberDandelionOmics

Gene overview

LXL04_021276

Reference: OH-1004 Chr: Chr04 Coordinates: 126382720-126384354 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1635 bp · LXL04_021276|LXL04_021276|OH1004|cDNA

ATGAAGTCGTTAGTTATGCTTTCCATCCTACTCACTCCTCTCCTCTTCTCGTTTTCGAACGCCGCCGTAGATCCCGATTCAGTTTACCAGTCGTTTATCCAATGCCTCCCCTCACAGTCAACTGAATCCTTACAGACTCTCTCATCCATCGTTTACGGCTCCACCGCCAATTCTTCCTCTTACACCACCGTCCTCCGAGCTTACATTAAAAACGAACGTCTGAACAGAACGTCGACACCCAAACCCGCCGTTATCATAAC...

CDS

Download CDS FASTA

1635 bp · LXL04_021276|LXL04_021276|OH1004|CDS

ATGAAGTCGTTAGTTATGCTTTCCATCCTACTCACTCCTCTCCTCTTCTCGTTTTCGAACGCCGCCGTAGATCCCGATTCAGTTTACCAGTCGTTTATCCAATGCCTCCCCTCACAGTCAACTGAATCCTTACAGACTCTCTCATCCATCGTTTACGGCTCCACCGCCAATTCTTCCTCTTACACCACCGTCCTCCGAGCTTACATTAAAAACGAACGTCTGAACAGAACGTCGACACCCAAACCCGCCGTTATCATAAC...

Protein

Download Protein FASTA

544 aa · LXL04_021276|LXL04_021276|OH1004|PROTEIN

MKSLVMLSILLTPLLFSFSNAAVDPDSVYQSFIQCLPSQSTESLQTLSSIVYGSTANSSSYTTVLRAYIKNERLNRTSTPKPAVIITPTKESQVQAAVLCAKKIGVQIKIRSGGHDYEGISYISSDPNFVILDMFNFRSIHVNIAKETAVVGTGALLGELYYRIYEKSKVHAFPAGVSPTVGVGGHLSGGGYGTMLRKFGLAVDHVIDARIVDVNGRVLDRKSMGEDLFWAIRGGGGASFGVILSYTVKLVRVPEVNTIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021276`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021276

Location Chr04:126382720-126384354 (-)

Description Similar to At1g11770: Berberine bridge enzyme-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11770`	Berberine bridge enzyme-like 2.	No verified direct reference in this release
`At4g20840`	Berberine bridge enzyme-like 21.	No verified direct reference in this release
`At4g20830`	Berberine bridge enzyme-like 19.	No verified direct reference in this release
`At1g01980`	Berberine bridge enzyme-like 1.	No verified direct reference in this release
`At1g30740`	Berberine bridge enzyme-like 12.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021276 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01980

ath:AT1G11770

ath:AT1G30740

ath:AT4G20830

ath:AT4G20840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.473

Rank 1 · LXL04_021276 · OH-1004

Lysosome / Vacuole0.158

Rank 2 · LXL04_021276 · OH-1004

Endoplasmic reticulum0.134

Rank 3 · LXL04_021276 · OH-1004

Cytoplasm0.116

Rank 4 · LXL04_021276 · OH-1004

Cell membrane0.100

Rank 5 · LXL04_021276 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565.29FAD_binding_482-219 aa

PF08031.18BBE471-529 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021276	`PF01565.29`	FAD_binding_4	82	219	3.5e-22	79.3
LXL04_021276	`PF08031.18`	BBE	471	529	1.2e-19	70.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SA99`	Arabidopsis thaliana	Berberine bridge enzyme-like 2	54.713%	Swiss-Prot	strong database homology
`Q9SVG3`	Arabidopsis thaliana	Berberine bridge enzyme-like 21	58.513%	Swiss-Prot	strong database homology
`Q9SVG4`	Arabidopsis thaliana	Berberine bridge enzyme-like 19	57.197%	Swiss-Prot	strong database homology
`Q9LPC3`	Arabidopsis thaliana	Berberine bridge enzyme-like 1	55.684%	Swiss-Prot	strong database homology
`Q9SA89`	Arabidopsis thaliana	Berberine bridge enzyme-like 12	53.184%	Swiss-Prot	strong database homology

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