Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1704 bp · LXL04_021216|LXL04_021216|OH1004|cDNA
ATGAAACGAGATTACCCACAACAGGACTACACCTTCCTCAATGGCGGCAGCTCCACTTCCGCCTCCACCGCCGCCGCCGCTACTGCTTCTGGGTTTTCTGATTTGACCGGGAAATCGAAGATGTGGGATGAGGTTGAGGAGCACGATGCCGGCGTTGATGAGCTTTTGGCGGTGCTTGGTTACAAAGTTAAGTCGTCCGATATGGCTGATGTTGCGCAAAAGATCGAGCAGCTGGAGGGTGTGTTAGGGAACGATGATGG...
1704 bp · LXL04_021216|LXL04_021216|OH1004|CDS
ATGAAACGAGATTACCCACAACAGGACTACACCTTCCTCAATGGCGGCAGCTCCACTTCCGCCTCCACCGCCGCCGCCGCTACTGCTTCTGGGTTTTCTGATTTGACCGGGAAATCGAAGATGTGGGATGAGGTTGAGGAGCACGATGCCGGCGTTGATGAGCTTTTGGCGGTGCTTGGTTACAAAGTTAAGTCGTCCGATATGGCTGATGTTGCGCAAAAGATCGAGCAGCTGGAGGGTGTGTTAGGGAACGATGATGG...
Protein
Download Protein FASTA567 aa · LXL04_021216|LXL04_021216|OH1004|PROTEIN
MKRDYPQQDYTFLNGGSSTSASTAAAATASGFSDLTGKSKMWDEVEEHDAGVDELLAVLGYKVKSSDMADVAQKIEQLEGVLGNDDGLSQLASDSVHYNPSDLSSWLESMICELNPTAQNPGVHDSFVTNASVTQSGVDSSSVFVDDLKAIPGNAIYPPTKKQKPSSPSTGASSSYDPNPIVLVDTQENGIRLVHTLMACAEAVQQDDLKLAETLVKQAGILAFSQAGAMRKVATYFAEALARRIYRLYPKTPQDSPAFQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021216 |
|---|---|
| TK1151 ID | TkA05G367290 |
| OH-1004 ID | LXL04_021216 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 89.000 |
| Protein coverage (%) | TK1151 70.360 / OH-1004 49.735Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021216 |
|---|---|
| Location | Chr04:124779152-124780855 (+) |
| Description | Similar to GAI1: DELLA protein GAI1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009737 response to abscisic acid Biological Process GO:0009740 gibberellic acid mediated signaling pathway Biological Process GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process GO:0010187 negative regulation of seed germination Biological Process GO:0016036 cellular response to phosphate starvation Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:2000033 regulation of seed dormancy process Biological Process GO:0005634 nucleus Cellular Component GO:0003700 DNA-binding transcription factor activity Molecular Function GO:0043565 sequence-specific DNA binding Molecular Function |
| KEGG gene cross-reference | brp:103827572 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12041.14DELLA53-118 aaPF03514.21GRAS193-565 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021216 | PF12041.14 | DELLA | 53 | 118 | 1.3e-32 | 112.2 |
| LXL04_021216 | PF03514.21 | GRAS | 193 | 565 | 1.7e-134 | 449.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.