LXL04_021017 | RubberDandelionOmics

Gene overview

LXL04_021017

Reference: OH-1004 Chr: Chr04 Coordinates: 119143306-119147242 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1749 bp · LXL04_021017|LXL04_021017|OH1004|cDNA

ATGGATTCGGTGTCGATCCGTGTGCCTTACAAAAACCTCAAGCATGATGCGGATGCGGAGGTTGAAATGATGAGTTTCGAGGTAGAACCTAATCCACGGATCGAATCCGATAGTTCGAATAGATTTTCTAATGGACATGACTCCAGTTATTCTTCTTCACCGCAAGGAGCGCCGACGGAGAATTGTAGCTTAATTACGTTAATTTTGAGTTGTACGGTGGCTGCCGGCGTTCAGTTTGGTTGGGCCTTGCAACTATCGCT...

CDS

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1749 bp · LXL04_021017|LXL04_021017|OH1004|CDS

ATGGATTCGGTGTCGATCCGTGTGCCTTACAAAAACCTCAAGCATGATGCGGATGCGGAGGTTGAAATGATGAGTTTCGAGGTAGAACCTAATCCACGGATCGAATCCGATAGTTCGAATAGATTTTCTAATGGACATGACTCCAGTTATTCTTCTTCACCGCAAGGAGCGCCGACGGAGAATTGTAGCTTAATTACGTTAATTTTGAGTTGTACGGTGGCTGCCGGCGTTCAGTTTGGTTGGGCCTTGCAACTATCGCT...

Protein

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582 aa · LXL04_021017|LXL04_021017|OH1004|PROTEIN

MDSVSIRVPYKNLKHDADAEVEMMSFEVEPNPRIESDSSNRFSNGHDSSYSSSPQGAPTENCSLITLILSCTVAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDRCTSKYGRRRPFILVGSLMISIAVITIGFSADIGYLIGDTKEHCSVYKGTRTRAAFVFIIGFWMLDLANNTVQGPARALLADLAGPDQRNSANAIFCSWMAIGNILGFLSGSSGNWHRWFPFLKSRACCEACGNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021017`
TK1151 ID	TkA05G342690
OH-1004 ID	LXL04_021017
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 94.866 / OH-1004 73.024 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021017

Location Chr04:119143306-119147242 (-)

Description Similar to SUC3: Sucrose transport protein SUC3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02860`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	AtSUC3, a gene encoding a new Arabidopsis sucrose transporter, is expressed in cells adjacent to the vascular tissue and in a carpel cell layer.2000 · DOI: 10.1046/j.1365-313x.2000.00934.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0827200`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	No verified direct reference in this release
`UniProt: B8AF63`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	No verified direct reference in this release
`Os03g0170900`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	Transport activity of rice sucrose transporters OsSUT1 and OsSUT5.2010 · DOI: 10.1093/pcp/pcp172 Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected.2010 · DOI: 10.1093/jxb/erq175 cDNA cloning and tissue specific expression of a gene for sucrose transporter from rice (Oryza sativa L.).1997 · DOI: 10.1093/oxfordjournals.pcp.a029134
`UniProt: Q9LKH3`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021017 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009846 pollen germination Biological Process

GO:0015768 maltose transport Biological Process

GO:0015770 sucrose transport Biological Process

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0005364 maltose:proton symporter activity Molecular Function

GO:0008506 sucrose:proton symporter activity Molecular Function

GO:0008515 sucrose transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G02860

dosa:Os02g0827200

dosa:Os03g0170900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.417

Rank 1 · LXL04_021017 · OH-1004

Cell membrane0.300

Rank 2 · LXL04_021017 · OH-1004

Cytoplasm0.211

Rank 3 · LXL04_021017 · OH-1004

Golgi apparatus0.128

Rank 4 · LXL04_021017 · OH-1004

Endoplasmic reticulum0.118

Rank 5 · LXL04_021017 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_173-377 aa

PF13347.13MFS_280-294 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021017	`PF07690.22`	MFS_1	73	377	3.4e-15	56.5
LXL04_021017	`PF13347.13`	MFS_2	80	294	3.1e-08	33.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80605`	Arabidopsis thaliana	Sucrose transport protein SUC3	69.767%	Swiss-Prot	strong database homology
`Q6YK44`	Oryza sativa subsp. japonica	Sucrose transport protein SUT4	65.882%	Swiss-Prot	strong database homology
`B8AF63`	Oryza sativa subsp. indica	Sucrose transport protein SUT4	65.882%	Swiss-Prot	strong database homology
`Q10R54`	Oryza sativa subsp. japonica	Sucrose transport protein SUT1	57.611%	Swiss-Prot	strong database homology
`Q9LKH3`	Oryza sativa subsp. indica	Sucrose transport protein SUT1	57.611%	Swiss-Prot	strong database homology

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