Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3048 bp · LXL04_020903|LXL04_020903|OH1004|cDNA
ATGctaagtgtgtcttctgatgtggggtgtgcgggtaggaaccgggtcccgaacagacccgtaagttattatattgcgggaattaccgaccggagcttgatgcgtgtacacgtttgtgtagtgacggagattgaaggaagtatcccgggagacactgctgctatcacctcctctcagctcagacgatctaaccgagATGAAAGTGTGTACGACTCCACCAACTTCAAACGACGTTTTCGTTTGAGTCAGAATTTCTTTAT...
3048 bp · LXL04_020903|LXL04_020903|OH1004|CDS
ATGCTAAGTGTGTCTTCTGATGTGGGGTGTGCGGGTAGGAACCGGGTCCCGAACAGACCCGTAAGTTATTATATTGCGGGAATTACCGACCGGAGCTTGATGCGTGTACACGTTTGTGTAGTGACGGAGATTGAAGGAAGTATCCCGGGAGACACTGCTGCTATCACCTCCTCTCAGCTCAGACGATCTAACCGAGATGAAAGTGTGTACGACTCCACCAACTTCAAACGACGTTTTCGTTTGAGTCAGAATTTCTTTAT...
Protein
Download Protein FASTA1015 aa · LXL04_020903|LXL04_020903|OH1004|PROTEIN
MLSVSSDVGCAGRNRVPNRPVSYYIAGITDRSLMRVHVCVVTEIEGSIPGDTAAITSSQLRRSNRDESVYDSTNFKRRFRLSQNFFMRICSALENRYPFFQQRYDARGRLGFSALQKCTAAIRLMAYGATSDSLDEYLKMSERTARECLYRFSKRVVKLFHSIYLRKPSLSDVQKLFPVHEEKHGFPGMLGSVDCTHWDWRNCPQAWRGMYTGGHHGTPSLVLEAAASQDLWIWHAFFGVAGSNNDINVLDQSPIFNDML...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020903 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020903 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:114053276-114059310 (+) | |||||||||
| Description | Similar to PGL3: Polygalacturonase 1 beta-like protein 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009827 plant-type cell wall modification Biological Process GO:0009835 fruit ripening Biological Process GO:0042547 cell wall modification involved in multidimensional cell growth Biological Process GO:0071555 cell wall organization Biological Process GO:0005576 extracellular region Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0048046 apoplast Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G23760 ath:AT1G70370 sly:101251775 sly:101252080 sly:543991 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF28509.1DUF841866-94 aaPF04827.21Plant_tran164-307 aaPF03181.21BURP800-1012 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_020903 | PF28509.1 | DUF8418 | 66 | 94 | 1.1e-06 | 28.9 |
| LXL04_020903 | PF04827.21 | Plant_tran | 164 | 307 | 8.3e-59 | 199.4 |
| LXL04_020903 | PF03181.21 | BURP | 800 | 1012 | 6.3e-67 | 226.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.