Gene Card
Gene overview
cDNA / CDS / Protein Sequences
447 bp · LXL04_020838|LXL04_020838|OH1004|cDNA
ATGACTTATTCTCATATTTGCACAATTCTGTCCATCTATATTACTGACATGAAAAATCTCCTTATTTCAAAACAGGGAACAAAAGTGTTTGGCCTCATATTCTCAAGCTACCTACGATACTTCCTAAAGACTTTCAAACCATATAAAAGATATTATATATCAAATGCCAACCTCAATAAAATAGAACCCCACTTCGGTATCAATTCTTACGAATTTTCATGGTCACTTACCAACTCCACACTTGTCGAAGAATATCCCGA...
447 bp · LXL04_020838|LXL04_020838|OH1004|CDS
ATGACTTATTCTCATATTTGCACAATTCTGTCCATCTATATTACTGACATGAAAAATCTCCTTATTTCAAAACAGGGAACAAAAGTGTTTGGCCTCATATTCTCAAGCTACCTACGATACTTCCTAAAGACTTTCAAACCATATAAAAGATATTATATATCAAATGCCAACCTCAATAAAATAGAACCCCACTTCGGTATCAATTCTTACGAATTTTCATGGTCACTTACCAACTCCACACTTGTCGAAGAATATCCCGA...
Protein
Download Protein FASTA148 aa · LXL04_020838|LXL04_020838|OH1004|PROTEIN
MTYSHICTILSIYITDMKNLLISKQGTKVFGLIFSSYLRYFLKTFKPYKRYYISNANLNKIEPHFGINSYEFSWSLTNSTLVEEYPENIPPILPCEFHFTPFKELHKHAECNRFQDVRGMVIKCFPSQELQQRSDSEEIITKRDVIIL
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020838 |
|---|---|
| TK1151 ID | TkA05G315130 |
| OH-1004 ID | LXL04_020838 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 89.189Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020838 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:110765661-110766180 (-) | |||||||||
| Description | Similar to RPA1B: Replication protein A 70 kDa DNA-binding subunit B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0007004 telomere maintenance via telomerase Biological Process GO:0010224 response to UV-B Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0005634 nucleus Cellular Component GO:0005662 DNA replication factor A complex Cellular Component GO:0003684 damaged DNA binding Molecular Function GO:0004386 helicase activity Molecular Function GO:0005524 ATP binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G08020 ath:AT5G61000 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.