LXL04_020794 | RubberDandelionOmics

Gene overview

LXL04_020794

Reference: OH-1004 Chr: Chr04 Coordinates: 109317063-109318291 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

681 bp · LXL04_020794|LXL04_020794|OH1004|cDNA

ATGTCTCCGATCTACATGCTAGTTATCTCTATTACATTATTGCTGCCAATTTCGACTTTCTCTTTACCGGACTGTAATTTTCCGGCAGTATTTAACTTCGGCGATTCCAATTCAGATACTGGTGGTTTATCCGCTATGTTCGGTCAAGCTCCTCCGCCTAACGGCGAAACTTTTTTCCATTCTCCCGCTGGCCGCTACTGCGATGGCCGTGTTCTGATTGATTTCATAGCTGAAGGTTTAGGATTACCTCTTCTTAGTCC...

CDS

Download CDS FASTA

681 bp · LXL04_020794|LXL04_020794|OH1004|CDS

ATGTCTCCGATCTACATGCTAGTTATCTCTATTACATTATTGCTGCCAATTTCGACTTTCTCTTTACCGGACTGTAATTTTCCGGCAGTATTTAACTTCGGCGATTCCAATTCAGATACTGGTGGTTTATCCGCTATGTTCGGTCAAGCTCCTCCGCCTAACGGCGAAACTTTTTTCCATTCTCCCGCTGGCCGCTACTGCGATGGCCGTGTTCTGATTGATTTCATAGCTGAAGGTTTAGGATTACCTCTTCTTAGTCC...

Protein

Download Protein FASTA

226 aa · LXL04_020794|LXL04_020794|OH1004|PROTEIN

MSPIYMLVISITLLLPISTFSLPDCNFPAVFNFGDSNSDTGGLSAMFGQAPPPNGETFFHSPAGRYCDGRVLIDFIAEGLGLPLLSPFLDSMGTNFSHGASFATAGSTIRRQNTTIFQSGYSPISLDIQYAQFNDFMKRSQIIRQKGDVFRNLFPNIDKFSRALYTFDIGQNDLTAGYKLNMSTQEVKAYVPDVISQLTTVVQVRYFLFPIELLQLLRISENLKKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020794`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_020794

Location Chr04:109317063-109318291 (-)

Description Similar to At3g26430: GDSL esterase/lipase At3g26430

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26430`	Lipase that can hydrolyze p-nitrophenyl butyrate and p- nitrophenyl palmitate in vitro.	The Arabidopsis thaliana ortholog of a purported maize cholinesterase gene encodes a GDSL-lipase.2013 · DOI: 10.1007/s11103-013-0021-8
`At1g67830`	Hydrolyzes alpha-1,2-linked fucose.	AtFXG1, an Arabidopsis gene encoding alpha-L-fucosidase active against fucosylated xyloglucan oligosaccharides.2002 · DOI: 10.1104/pp.128.1.247
`At5g14450`	GDSL esterase/lipase At5g14450.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020794 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006581 acetylcholine catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004560 alpha-L-fucosidase activity Molecular Function

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

GO:0019863 IgE binding Molecular Function

KEGG gene cross-reference

ath:AT1G67830

ath:AT3G26430

ath:AT5G14450

zma:606473

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.432

Rank 1 · LXL04_020794 · OH-1004

Lysosome / Vacuole0.206

Rank 2 · LXL04_020794 · OH-1004

Endoplasmic reticulum0.123

Rank 3 · LXL04_020794 · OH-1004

Cytoplasm0.116

Rank 4 · LXL04_020794 · OH-1004

Cell membrane0.062

Rank 5 · LXL04_020794 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL30-199 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020794	`PF00657.29`	Lipase_GDSL	30	199	2.5e-22	80.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LIN2`	Arabidopsis thaliana	GDSL esterase/lipase At3g26430	69.565%	Swiss-Prot	strong database homology
`Q9FXE5`	Arabidopsis thaliana	Alpha-L-fucosidase 3	64.286%	Swiss-Prot	strong database homology
`Q9LY84`	Arabidopsis thaliana	GDSL esterase/lipase At5g14450	51.208%	Swiss-Prot	strong database homology

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