Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1200 bp · LXL04_020778|LXL04_020778|OH1004|cDNA
ATGGCGATGATTAGTTTATCAAAATTTGTCGATAAAATTTATTTGATGGCAGAAGGTGGATCTCGTTATTGTTCTAAAAAATCTGATGATATATGCGGTGAGGATTCAGGAAGATCTTCAACAATGTCAAGAGTACGATGCATTCTTCGGGGGCTAGAGTTAAAAACACTCGTCTTCCTCTTCGTCTTAGTCCCAACCGTAATCCTCGGATTATACGTTCACGGTCAAAAAATCTCCTACTTCCTCCGCCCTTTATGGGA...
1200 bp · LXL04_020778|LXL04_020778|OH1004|CDS
ATGGCGATGATTAGTTTATCAAAATTTGTCGATAAAATTTATTTGATGGCAGAAGGTGGATCTCGTTATTGTTCTAAAAAATCTGATGATATATGCGGTGAGGATTCAGGAAGATCTTCAACAATGTCAAGAGTACGATGCATTCTTCGGGGGCTAGAGTTAAAAACACTCGTCTTCCTCTTCGTCTTAGTCCCAACCGTAATCCTCGGATTATACGTTCACGGTCAAAAAATCTCCTACTTCCTCCGCCCTTTATGGGA...
Protein
Download Protein FASTA399 aa · LXL04_020778|LXL04_020778|OH1004|PROTEIN
MAMISLSKFVDKIYLMAEGGSRYCSKKSDDICGEDSGRSSTMSRVRCILRGLELKTLVFLFVLVPTVILGLYVHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMQNLCRLHGWGTREFPRRVFDAVLFSNEVDLLTIRWHELYPYVTEFVLLESNSTFTGLPKPLVFDSIRDQFQFVEPRLTYGKIPGRFRKGENPFVEEAYQRLALDYLLRKAGIQDDDLLIMSDVDEIPSRHTINLLRWCDDIPSILHLRLKNYLY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020778 |
|---|---|
| TK1151 ID | TkA05G305620 |
| OH-1004 ID | LXL04_020778 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020778 |
|---|---|
| Location | Chr04:108822331-108824040 (+) |
| Description | Similar to Mgat3: Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006044 N-acetylglucosamine metabolic process Biological Process GO:0006487 protein N-linked glycosylation Biological Process GO:0008104 intracellular protein localization Biological Process GO:0030334 regulation of cell migration Biological Process GO:0034599 cellular response to oxidative stress Biological Process GO:0050435 amyloid-beta metabolic process Biological Process GO:1902966 positive regulation of protein localization to early endosome Biological Process GO:1905166 negative regulation of lysosomal protein catabolic process Biological Process GO:0000139 Golgi membrane Cellular Component GO:0016020 membrane Cellular Component GO:0032580 Golgi cisterna membrane Cellular Component GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity Molecular Function |
| KEGG gene cross-reference | hsa:4248 rno:29582 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04724.19Glyco_transf_1752-397 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_020778 | PF04724.19 | Glyco_transf_17 | 52 | 397 | 1.1e-185 | 617.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.