LXL04_020709 | RubberDandelionOmics

Gene overview

LXL04_020709

Reference: OH-1004 Chr: Chr04 Coordinates: 106548070-106549341 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

849 bp · LXL04_020709|LXL04_020709|OH1004|cDNA

ATGGAGGTATGTATGTCTCTGAAAGGACACTCACTGGTTCCAACACCCTCCATCGTTTCCAAGAATCTGAGAATGATCGATGATTCCAACTTAATCAGACACTCGCTCTCTTCATCTCAAATTCAAAAGAAGCAACACCATAATCAAGGAAACAGACTCCTGGTGGTTGAAGCAAAGGGGAAAAAAGGAATGCAAGCTCGTCAGTTCCAACGCCCGATGCCTGCTATGCCCAAAATTGAAGACGACGGAAATCCTAGATT...

CDS

Download CDS FASTA

849 bp · LXL04_020709|LXL04_020709|OH1004|CDS

ATGGAGGTATGTATGTCTCTGAAAGGACACTCACTGGTTCCAACACCCTCCATCGTTTCCAAGAATCTGAGAATGATCGATGATTCCAACTTAATCAGACACTCGCTCTCTTCATCTCAAATTCAAAAGAAGCAACACCATAATCAAGGAAACAGACTCCTGGTGGTTGAAGCAAAGGGGAAAAAAGGAATGCAAGCTCGTCAGTTCCAACGCCCGATGCCTGCTATGCCCAAAATTGAAGACGACGGAAATCCTAGATT...

Protein

Download Protein FASTA

282 aa · LXL04_020709|LXL04_020709|OH1004|PROTEIN

MEVCMSLKGHSLVPTPSIVSKNLRMIDDSNLIRHSLSSSQIQKKQHHNQGNRLLVVEAKGKKGMQARQFQRPMPAMPKIEDDGNPRFVIFIRMANVSFLFTYLMRNQIRAHLGQISDIVLTMKLELQVYTTGNDSLLVDDVIFVYLWYPVSIVAGGTTAKILVSAKDNFVGKYIYKDTLSKNLAGVIYKDEKEVQKTAIRQHRVLRSATEFRYGYKLVEGTNIRAALASSDVIELPTKAELKTVLDKVVDFFGDAKESFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020709`
TK1151 ID	TkA05G296960
OH-1004 ID	LXL04_020709
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 97.887 / OH-1004 49.291 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_020709

Location Chr04:106548070-106549341 (+)

Description Similar to HHL1: Protein HHL1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67700`	Involved in photoprotection.	HYPERSENSITIVE TO HIGH LIGHT1 interacts with LOW QUANTUM YIELD OF PHOTOSYSTEM II1 and functions in protection of photosystem II from photodamage in Arabidopsis.2014 · DOI: 10.1105/tpc.113.122424

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020709 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G67700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.977

Rank 1 · LXL04_020709 · OH-1004

Mitochondrion0.024

Rank 2 · LXL04_020709 · OH-1004

Nucleus0.019

Rank 3 · LXL04_020709 · OH-1004

Cytoplasm0.015

Rank 4 · LXL04_020709 · OH-1004

Cell membrane0.013

Rank 5 · LXL04_020709 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20133.5HHL1-like181-252 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020709	`PF20133.5`	HHL1-like	181	252	2.2e-07	31.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LDL0`	Arabidopsis thaliana	Protein HHL1, chloroplastic	53.357%	Swiss-Prot	strong database homology

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