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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_020671
Reference: OH-1004 Chr: Chr04 Coordinates: 104218465-104228791 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6015 bp · LXL04_020671|LXL04_020671|OH1004|cDNA

ATGAAAGTGACGCTACTAACCCGGAGGAATATCTACACCGGAGTGAAGATCAACCCCGAAGCCTTGAAGACCAAGACTCCGAAACAAATCAATGTGAATTTTTCGCCTAATCGAAAAAGAGGTGTTGTTGAAGCAGGTGCTACTtcgcaacaagggggagaaaaGCCAATTCCGAATAAAGGTCAAACATCATCTATCCCTACTCCTCCATTTCAAACCACAATAACAACCACAATCAATCTTCCGAAGAATCCCACTTC...

CDS

Download CDS FASTA

6015 bp · LXL04_020671|LXL04_020671|OH1004|CDS

ATGAAAGTGACGCTACTAACCCGGAGGAATATCTACACCGGAGTGAAGATCAACCCCGAAGCCTTGAAGACCAAGACTCCGAAACAAATCAATGTGAATTTTTCGCCTAATCGAAAAAGAGGTGTTGTTGAAGCAGGTGCTACTTCGCAACAAGGGGGAGAAAAGCCAATTCCGAATAAAGGTCAAACATCATCTATCCCTACTCCTCCATTTCAAACCACAATAACAACCACAATCAATCTTCCGAAGAATCCCACTTC...

Protein

Download Protein FASTA

2004 aa · LXL04_020671|LXL04_020671|OH1004|PROTEIN

MKVTLLTRRNIYTGVKINPEALKTKTPKQINVNFSPNRKRGVVEAGATSQQGGEKPIPNKGQTSSIPTPPFQTTITTTINLPKNPTSSKPSRPPIKGIVINPGSRSSSSIRKPVYSAFDTDLRKKASLERESDLIKEPAKEIWKQWTKQDIVEASSGGSNEYWFIPIASYSIAIDSDYQRDMLITGRPTYFERSKNEESVFTMADLPLMNLNDWISLYNILVLKGNVNFIKEYSHIKPMILSYMYEIGKFDIEVILTKTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_020671
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_020671
LocationChr04:104218465-104228791 (+)
DescriptionSimilar to Ank3: Ankyrin-3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020671 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0007009 plasma membrane organization Biological Process
GO:0007165 signal transduction Biological Process
GO:0007528 neuromuscular junction development Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0010650 positive regulation of cell communication by electrical coupling Biological Process
GO:0010765 positive regulation of sodium ion transport Biological Process
GO:0010960 magnesium ion homeostasis Biological Process
GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity Biological Process
GO:0032507 maintenance of protein location in cell Biological Process
GO:0034112 positive regulation of homotypic cell-cell adhesion Biological Process
GO:0043001 Golgi to plasma membrane protein transport Biological Process
KEGG gene cross-reference
mmu:11735
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.661
Rank 1 · LXL04_020671 · OH-1004
Nucleus0.213
Rank 2 · LXL04_020671 · OH-1004
Extracellular0.112
Rank 3 · LXL04_020671 · OH-1004
Cell membrane0.092
Rank 4 · LXL04_020671 · OH-1004
Mitochondrion0.090
Rank 5 · LXL04_020671 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796.14Ank_2391-505 aa
PF12796.14Ank_2652-706 aa
PF12796.14Ank_2752-817 aa
PF12796.14Ank_2859-939 aa
PF13637.13Ank_4859-908 aa
PF00023.37Ank887-918 aa
PF12796.14Ank_21341-1455 aa
PF12796.14Ank_21602-1656 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_020671PF12796.14Ank_23915054e-93306.9
LXL04_020671PF12796.14Ank_26527064e-93306.9
LXL04_020671PF12796.14Ank_27528174e-93306.9
LXL04_020671PF12796.14Ank_28599394e-93306.9
LXL04_020671PF13637.13Ank_48599081.4e-55184.7
LXL04_020671PF00023.37Ank8879183.8e-77250.5
LXL04_020671PF12796.14Ank_2134114554e-93306.9
LXL04_020671PF12796.14Ank_2160216564e-93306.9
LXL04_020671PF12796.14Ank_2170517724e-93306.9
LXL04_020671PF13857.13Ank_5172517755e-41139.0
LXL04_020671PF12796.14Ank_2180918814e-93306.9
LXL04_020671PF13637.13Ank_4180918581.4e-55184.7
LXL04_020671PF13857.13Ank_5182618775e-41139.0
LXL04_020671PF00023.37Ank183718683.8e-77250.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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