LXL04_020647 | RubberDandelionOmics

Gene overview

LXL04_020647

Reference: OH-1004 Chr: Chr04 Coordinates: 101203355-101204845 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1230 bp · LXL04_020647|LXL04_020647|OH1004|cDNA

ATGGATTCAGAAGAGGCTAAGGTCGAGAATGGATCTACAAAATCTAAATTGTTAGACCTTTTGAAGAAAATTTTCGCGGTATATTTGGCATTAGTCACGAGTGTGTTCCAGAAACTCGAAGATTTTCTTGAACTGATTCACGTCTCTGTACATGACAAGGTTGACAACTATGCTCCGTCTCCGGTCAAGAACCTTCATGACAAATTCGATTCTCATTCCCGGGAAGCCGTTAAAAAAACAAAGTCGTTGTTCGTGGGTGG...

CDS

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1230 bp · LXL04_020647|LXL04_020647|OH1004|CDS

ATGGATTCAGAAGAGGCTAAGGTCGAGAATGGATCTACAAAATCTAAATTGTTAGACCTTTTGAAGAAAATTTTCGCGGTATATTTGGCATTAGTCACGAGTGTGTTCCAGAAACTCGAAGATTTTCTTGAACTGATTCACGTCTCTGTACATGACAAGGTTGACAACTATGCTCCGTCTCCGGTCAAGAACCTTCATGACAAATTCGATTCTCATTCCCGGGAAGCCGTTAAAAAAACAAAGTCGTTGTTCGTGGGTGG...

Protein

Download Protein FASTA

409 aa · LXL04_020647|LXL04_020647|OH1004|PROTEIN

MDSEEAKVENGSTKSKLLDLLKKIFAVYLALVTSVFQKLEDFLELIHVSVHDKVDNYAPSPVKNLHDKFDSHSREAVKKTKSLFVGGIPVLGNVVGGITNSIANPKDVANKMIDRTTSLVMDNPVAQAVNSAAEKMMQEAQSAGKKAALKSVYASITLLLLPLIAELWYKANTKEWFSKLAEVILPLIEKFCKWYNDTVDKMEEKGYSFFGYLPTMPILEMETAYKLVKTKNDGIEALEDAGEVASGIVGNIPIVGGLAQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020647`
TK1151 ID	TkA05G282200
OH-1004 ID	LXL04_020647
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_020647

Location Chr04:101203355-101204845 (+)

Description Similar to At1g67360: REF/SRPP-like protein At1g67360

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67360`	REF/SRPP-like protein At1g67360.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020647 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0034389 lipid droplet organization Biological Process

GO:0045927 positive regulation of growth Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080186 developmental vegetative growth Biological Process

GO:1902584 positive regulation of response to water deprivation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005811 lipid droplet Cellular Component

KEGG gene cross-reference

ath:AT1G67360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.238

Rank 1 · LXL04_020647 · OH-1004

Extracellular0.180

Rank 2 · LXL04_020647 · OH-1004

Cell membrane0.175

Rank 3 · LXL04_020647 · OH-1004

Endoplasmic reticulum0.145

Rank 4 · LXL04_020647 · OH-1004

Mitochondrion0.106

Rank 5 · LXL04_020647 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05755.18REF124-226 aa

PF05755.18REF279-378 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020647	`PF05755.18`	REF	124	226	2.3e-28	100.2
LXL04_020647	`PF05755.18`	REF	279	378	2.3e-28	100.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FYF7`	Arabidopsis thaliana	REF/SRPP-like protein At1g67360	30.108%	Swiss-Prot	weak database homology

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