LXL04_019997 | RubberDandelionOmics

Gene overview

LXL04_019997

Reference: OH-1004 Chr: Chr04 Coordinates: 46687472-46689830 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_019997|LXL04_019997|OH1004|cDNA

ATGGGTGCTTACAGAACAGATGATGATTACGACTACTTGTTTAAAGTAGTTCTGATCGGAGATTCTGGAGTTGGCAAATCAAATCTGTTGTCTAGATTCACTCGCAACGAGTTCAGTCTTGAGTCCAAATCTACCATCGGCGTTGAATTCGCCACCCGTAGCATTCGTGTTGATGACAAAGTTGTCAAGGCTCAGATTTGGGACACCGCTGGCCAGGAAAGGTACCGTGCAATTACAAGCGCATACTACCGAGGAGCAGT...

CDS

Download CDS FASTA

654 bp · LXL04_019997|LXL04_019997|OH1004|CDS

ATGGGTGCTTACAGAACAGATGATGATTACGACTACTTGTTTAAAGTAGTTCTGATCGGAGATTCTGGAGTTGGCAAATCAAATCTGTTGTCTAGATTCACTCGCAACGAGTTCAGTCTTGAGTCCAAATCTACCATCGGCGTTGAATTCGCCACCCGTAGCATTCGTGTTGATGACAAAGTTGTCAAGGCTCAGATTTGGGACACCGCTGGCCAGGAAAGGTACCGTGCAATTACAAGCGCATACTACCGAGGAGCAGT...

Protein

Download Protein FASTA

217 aa · LXL04_019997|LXL04_019997|OH1004|PROTEIN

MGAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVQSEDATSFAEKEHTYFMETSALESLNVEDAFTEVLTQIYHIVSRKALEAGDDAATLPKGQTISVGGKDDVSAVKKGGCCSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019997`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019997

Location Chr04:46687472-46689830 (-)

Description Similar to RABA1F: Ras-related protein RABA1f

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60860`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At3g15060`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At1g28550`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At2g33870`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019997 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0005768 endosome Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0003924 GTPase activity Molecular Function

GO:0005525 GTP binding Molecular Function

KEGG gene cross-reference

ath:AT1G28550

ath:AT2G33870

ath:AT3G15060

ath:AT5G60860

nta:107770722

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.472

Rank 1 · LXL04_019997 · OH-1004

Golgi apparatus0.432

Rank 2 · LXL04_019997 · OH-1004

Lysosome / Vacuole0.203

Rank 3 · LXL04_019997 · OH-1004

Cell membrane0.201

Rank 4 · LXL04_019997 · OH-1004

Endoplasmic reticulum0.135

Rank 5 · LXL04_019997 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025.28Arf14-142 aa

PF00071.29Ras15-175 aa

PF08477.20Roc15-129 aa

PF01926.30MMR_HSR115-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019997	`PF00025.28`	Arf	14	142	2.6e-12	47.3
LXL04_019997	`PF00071.29`	Ras	15	175	2.1e-63	213.4
LXL04_019997	`PF08477.20`	Roc	15	129	2.4e-35	122.1
LXL04_019997	`PF01926.30`	MMR_HSR1	15	121	4.7e-07	30.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJH0`	Arabidopsis thaliana	Ras-related protein RABA1f	88.018%	Swiss-Prot	strong database homology
`Q9LK99`	Arabidopsis thaliana	Ras-related protein RABA1g	85.714%	Swiss-Prot	strong database homology
`Q9S810`	Arabidopsis thaliana	Ras-related protein RABA1i	83.486%	Swiss-Prot	strong database homology
`Q1PEX3`	Arabidopsis thaliana	Ras-related protein RABA1h	81.651%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card