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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

LXL04_019628
Reference: OH-1004 Chr: Chr04 Coordinates: 35539984-35543031 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

1122 bp · LXL04_019628|LXL04_019628|OH1004|cDNA

ATGGAAAAGCTTATCCTTAACCCCAACCACCATATCCCTTCGAAGCAGCAGCTCTACCTAAAGCCCCGTCCATTTCTTCCCCAACTCGCCCGGTTCCAAACCACTAAACTCTTCAATCTCTCCCACTACACCCTCCGAGTCAACTCAATCTCTTGCAAACATGAACAAAATTCTTCATTCAATTCTTCATCGCCGGTCATCAAAACGCCAGAAACAGATTTGCTATTTTCGGAAAATAAGGGTTCTGTTATGCCCAAACC...

1122 bp · LXL04_019628|LXL04_019628|OH1004|CDS

ATGGAAAAGCTTATCCTTAACCCCAACCACCATATCCCTTCGAAGCAGCAGCTCTACCTAAAGCCCCGTCCATTTCTTCCCCAACTCGCCCGGTTCCAAACCACTAAACTCTTCAATCTCTCCCACTACACCCTCCGAGTCAACTCAATCTCTTGCAAACATGAACAAAATTCTTCATTCAATTCTTCATCGCCGGTCATCAAAACGCCAGAAACAGATTTGCTATTTTCGGAAAATAAGGGTTCTGTTATGCCCAAACC...

373 aa · LXL04_019628|LXL04_019628|OH1004|PROTEIN

MEKLILNPNHHIPSKQQLYLKPRPFLPQLARFQTTKLFNLSHYTLRVNSISCKHEQNSSFNSSSPVIKTPETDLLFSENKGSVMPKPHFLQQLSQSFSHQQKVAVTGTIILLSALIFTIQPLFISPALASFQTATKTGSNPLIRSELLNSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRVESALVGALWGCGHDAGQVIFGLLFLLLKDRLHIEIIRTWGTRVVGFTLLVIGAMGIREASEVPTPCVALENGECDVTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019628
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019628
LocationChr04:35539984-35543031 (+)
DescriptionSimilar to ureH: Urease accessory protein UreH (Bacillus sp. (strain TB-90)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g16800 Together with CGF1, essential protein which supports female gametogenesis and embryogenesis, probably by securing local energy supply.
At4g35080 Together with CGF2, essential protein which supports female gametogenesis and embryogenesis, probably by securing local energy supply.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019628 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009658 chloroplast organization Biological Process
GO:0048366 leaf development Biological Process
GO:0048481 plant ovule development Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0031969 chloroplast membrane Cellular Component
KEGG gene cross-reference
ath:AT2G16800
ath:AT4G35080
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.983
Rank 1 · LXL04_019628 · OH-1004
Nucleus0.021
Rank 2 · LXL04_019628 · OH-1004
Mitochondrion0.021
Rank 3 · LXL04_019628 · OH-1004
Cytoplasm0.017
Rank 4 · LXL04_019628 · OH-1004
Cell membrane0.013
Rank 5 · LXL04_019628 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SLD9Arabidopsis thalianaChloroplast protein FOR GROWTH AND FERTILITY 262.016%Swiss-Protstrong database homology
Q94A99Arabidopsis thalianaChloroplast protein FOR GROWTH AND FERTILITY 160.218%Swiss-Protstrong database homology

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