LXL04_019525 | RubberDandelionOmics

Gene overview

LXL04_019525

Reference: OH-1004 Chr: Chr04 Coordinates: 32947606-32954668 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2796 bp · LXL04_019525|LXL04_019525|OH1004|cDNA

ATGCCAGGCATCGACAATGTCGCTGATAGACTTGAGGGGTGTGGAAATGCCGTGATCTTGGAGCAAGAGAACTTGGTCACCGGGTGTTCGACGATATGCCAAAACCAAACTACCAGCCAAAGAAACAATTGTTATGGGATCAATTGTTGCCAGATCTCGATCCCTTACTATCTTAAATCATACAACATCGATACTACAGGCTTGCAACTGCCGACTACGGGTGGAGTTTATGGGTCTGCCTTTCTGGTGGATGAACAACG...

CDS

Download CDS FASTA

2796 bp · LXL04_019525|LXL04_019525|OH1004|CDS

ATGCCAGGCATCGACAATGTCGCTGATAGACTTGAGGGGTGTGGAAATGCCGTGATCTTGGAGCAAGAGAACTTGGTCACCGGGTGTTCGACGATATGCCAAAACCAAACTACCAGCCAAAGAAACAATTGTTATGGGATCAATTGTTGCCAGATCTCGATCCCTTACTATCTTAAATCATACAACATCGATACTACAGGCTTGCAACTGCCGACTACGGGTGGAGTTTATGGGTCTGCCTTTCTGGTGGATGAACAACG...

Protein

Download Protein FASTA

931 aa · LXL04_019525|LXL04_019525|OH1004|PROTEIN

MPGIDNVADRLEGCGNAVILEQENLVTGCSTICQNQTTSQRNNCYGINCCQISIPYYLKSYNIDTTGLQLPTTGGVYGSAFLVDEQRYSASRSSAQSAIVDNSFVPISLRWTLRQEEIGEKDCCSRERESLFLGNAVDECATCIGGCRLNGTGNITCVPTPASGKSSPIGVILEGEGMAVFDRRIVEEGGRGEAMAVAELAVRCLNLNGKNRPTLKEMAAELERIRNMSVTVTMKFLQLYLVMLISLASGATSAPIYARP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019525`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019525

Location Chr04:32947606-32954668 (-)

Description Similar to WAKL1: Wall-associated receptor kinase-like 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16120`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g16260`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g79670`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	RESISTANCE TO FUSARIUM OXYSPORUM 1, a dominant Arabidopsis disease-resistance gene, is not race specific.2005 · DOI: 10.1534/genetics.105.042218
`At1g16130`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g79680`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019525 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004383 guanylate cyclase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G16120

ath:AT1G16130

ath:AT1G16260

ath:AT1G79670

ath:AT1G79680

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.843

Rank 1 · LXL04_019525 · OH-1004

Cytoplasm0.090

Rank 2 · LXL04_019525 · OH-1004

Endoplasmic reticulum0.072

Rank 3 · LXL04_019525 · OH-1004

Nucleus0.045

Rank 4 · LXL04_019525 · OH-1004

Lysosome / Vacuole0.036

Rank 5 · LXL04_019525 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947.12GUB_WAK_bind262-318 aa

PF08488.17WAK389-460 aa

PF00069.32Pkinase617-883 aa

PF07714.24PK_Tyr_Ser-Thr620-885 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019525	`PF13947.12`	GUB_WAK_bind	262	318	6.5e-09	36.8
LXL04_019525	`PF08488.17`	WAK	389	460	7.1e-13	49.6
LXL04_019525	`PF00069.32`	Pkinase	617	883	1.1e-47	163.3
LXL04_019525	`PF07714.24`	PK_Tyr_Ser-Thr	620	885	1.8e-47	162.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S9M5`	Arabidopsis thaliana	Wall-associated receptor kinase-like 1	46.515%	Swiss-Prot	moderate database homology
`Q9SA25`	Arabidopsis thaliana	Wall-associated receptor kinase-like 8	45.588%	Swiss-Prot	moderate database homology
`Q8RY17`	Arabidopsis thaliana	Wall-associated receptor kinase-like 22	44.460%	Swiss-Prot	moderate database homology
`Q7X8C5`	Arabidopsis thaliana	Wall-associated receptor kinase-like 2	45.649%	Swiss-Prot	moderate database homology
`Q8VYA3`	Arabidopsis thaliana	Wall-associated receptor kinase-like 10	44.604%	Swiss-Prot	moderate database homology

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