LXL04_019479 | RubberDandelionOmics

Gene overview

LXL04_019479

Reference: OH-1004 Chr: Chr04 Coordinates: 32289271-32292024 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1224 bp · LXL04_019479|LXL04_019479|OH1004|cDNA

ATGAACCACCATGCTCTTCTACTCTTCGTTTTCTGCATACCACATCTAACCAATAGCATTGAGTTCAACTATCCGGCGGTTTTTAACTTTGGAGACTCGAATTCCGACACCGGCGACCTGGTCGCCGGTGTTGGTGATAAACTCGACCATCCTAACGGTCAAACTTATTTTAAGGGACCGTCGGGAAGGTTCTGTGATGGGCGTCTGATTATTGATTTCTTAAGTCAGTTCTCTTTCTGCCATTCTacatctatatctat...

CDS

Download CDS FASTA

1224 bp · LXL04_019479|LXL04_019479|OH1004|CDS

ATGAACCACCATGCTCTTCTACTCTTCGTTTTCTGCATACCACATCTAACCAATAGCATTGAGTTCAACTATCCGGCGGTTTTTAACTTTGGAGACTCGAATTCCGACACCGGCGACCTGGTCGCCGGTGTTGGTGATAAACTCGACCATCCTAACGGTCAAACTTATTTTAAGGGACCGTCGGGAAGGTTCTGTGATGGGCGTCTGATTATTGATTTCTTAAGTCAGTTCTCTTTCTGCCATTCTACATCTATATCTAT...

Protein

Download Protein FASTA

407 aa · LXL04_019479|LXL04_019479|OH1004|PROTEIN

MNHHALLLFVFCIPHLTNSIEFNYPAVFNFGDSNSDTGDLVAGVGDKLDHPNGQTYFKGPSGRFCDGRLIIDFLSQFSFCHSTSISISIFVSVNVSESVYGVIVVDAMDLPFLNAYLEALGVPNFRKGCNFAAAGSTVLPPTSPNAVSPFSFGIQVAQFFRFKNRVLQLQAKSRRFNKYLPDEDYFTRGLYMFDIGQNDIGGAFYSKSYDQIVASIPLVLVEFEAGIKKLYDDGARNFWIHNTGPLGCLAQNIAKFGTDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019479`
TK1151 ID	TkA05G055460
OH-1004 ID	LXL04_019479
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019479

Location Chr04:32289271-32292024 (-)

Description Similar to At1g54790: GDSL esterase/lipase At1g54790

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54790`	GDSL esterase/lipase At1g54790.	No verified direct reference in this release
`At3g05180`	GDSL esterase/lipase At3g05180.	No verified direct reference in this release
`At1g56670`	GDSL esterase/lipase LIP-4.	No verified direct reference in this release
`At1g09390`	GDSL esterase/lipase At1g09390.	No verified direct reference in this release
`At3g26430`	Lipase that can hydrolyze p-nitrophenyl butyrate and p- nitrophenyl palmitate in vitro.	The Arabidopsis thaliana ortholog of a purported maize cholinesterase gene encodes a GDSL-lipase.2013 · DOI: 10.1007/s11103-013-0021-8

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019479 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G09390

ath:AT1G54790

ath:AT1G56670

ath:AT3G05180

ath:AT3G26430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.428

Rank 1 · LXL04_019479 · OH-1004

Lysosome / Vacuole0.171

Rank 2 · LXL04_019479 · OH-1004

Endoplasmic reticulum0.135

Rank 3 · LXL04_019479 · OH-1004

Cytoplasm0.130

Rank 4 · LXL04_019479 · OH-1004

Cell membrane0.085

Rank 5 · LXL04_019479 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL27-385 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019479	`PF00657.29`	Lipase_GDSL	27	385	2.8e-43	149.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3ECP6`	Arabidopsis thaliana	GDSL esterase/lipase At1g54790	58.756%	Swiss-Prot	strong database homology
`Q9MAA1`	Arabidopsis thaliana	GDSL esterase/lipase At3g05180	53.867%	Swiss-Prot	strong database homology
`Q9FXB6`	Arabidopsis thaliana	GDSL esterase/lipase LIP-4	43.396%	Swiss-Prot	moderate database homology
`O80522`	Arabidopsis thaliana	GDSL esterase/lipase At1g09390	43.396%	Swiss-Prot	moderate database homology
`Q9LIN2`	Arabidopsis thaliana	GDSL esterase/lipase At3g26430	41.960%	Swiss-Prot	moderate database homology

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