LXL04_019415 | RubberDandelionOmics

Gene overview

LXL04_019415

Reference: OH-1004 Chr: Chr04 Coordinates: 30776701-30781095 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3699 bp · LXL04_019415|LXL04_019415|OH1004|cDNA

ATGGCCATCCTCACAGAATtacgagaagaagaagaacaggCAATAACATATGatgttttcttaagtttcaGGGGTAAAGACACTCGTCTCGGTTTTGTTGATCACCTCTACCAAGCTTTGCTGAATGAAAACATCTCTACCTTTTTTGATGAGCATGAGGTTGAAACTGGGGAAGAACTTAAACCCGAGCTTGCAAAAGCTATTAAAAGCTCTCGTGCTTCGATAATTGTGCTTTCTAAGAACTACGCCTCTTCAACATG...

CDS

Download CDS FASTA

3699 bp · LXL04_019415|LXL04_019415|OH1004|CDS

ATGGCCATCCTCACAGAATTACGAGAAGAAGAAGAACAGGCAATAACATATGATGTTTTCTTAAGTTTCAGGGGTAAAGACACTCGTCTCGGTTTTGTTGATCACCTCTACCAAGCTTTGCTGAATGAAAACATCTCTACCTTTTTTGATGAGCATGAGGTTGAAACTGGGGAAGAACTTAAACCCGAGCTTGCAAAAGCTATTAAAAGCTCTCGTGCTTCGATAATTGTGCTTTCTAAGAACTACGCCTCTTCAACATG...

Protein

Download Protein FASTA

1232 aa · LXL04_019415|LXL04_019415|OH1004|PROTEIN

MAILTELREEEEQAITYDVFLSFRGKDTRLGFVDHLYQALLNENISTFFDEHEVETGEELKPELAKAIKSSRASIIVLSKNYASSTWCLDELVMILEQRKTSNHIVIPVFYNVEPTHVRKQESTFGDALFEHKRRMGTEKDEEKKIQGACKLEMWTNGLTEVADLKGKDANGRRETVFIEELVKEIGSRLKLHTQTNLPHLIGMDASIHTISSWLKSPSSKTAQILTIWGMAGIGKTTLAKYIYKSHCHEFERSSFVDDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019415`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019415

Location Chr04:30776701-30781095 (+)

Description Similar to RUN1: Disease resistance protein RUN1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44510`	TIR-NB-LRR receptor-like protein that contributes to disease resistance induced by the Pseudomonas syringae type III effector AvrB.	Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.2008 · DOI: 10.1073/pnas.0802157105

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019415 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.366

Rank 1 · LXL04_019415 · OH-1004

Cytoplasm0.361

Rank 2 · LXL04_019415 · OH-1004

Nucleus0.303

Rank 3 · LXL04_019415 · OH-1004

Endoplasmic reticulum0.087

Rank 4 · LXL04_019415 · OH-1004

Plastid0.042

Rank 5 · LXL04_019415 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR17-196 aa

PF13676.12TIR_219-115 aa

PF00931.29NB-ARC207-380 aa

PF23282.2WHD_ROQ1455-526 aa

PF13855.13LRR_8665-719 aa

PF23598.2LRR_14687-794 aa

PF12799.14LRR_4688-719 aa

PF23286.1LRR_13803-901 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019415	`PF01582.26`	TIR	17	196	6.5e-45	153.8
LXL04_019415	`PF13676.12`	TIR_2	19	115	2e-18	67.7
LXL04_019415	`PF00931.29`	NB-ARC	207	380	1.6e-17	64.4
LXL04_019415	`PF23282.2`	WHD_ROQ1	455	526	5.3e-19	68.9
LXL04_019415	`PF13855.13`	LRR_8	665	719	7.7e-12	45.5
LXL04_019415	`PF23598.2`	LRR_14	687	794	2e-07	30.8
LXL04_019415	`PF12799.14`	LRR_4	688	719	1.5e-15	57.6
LXL04_019415	`PF23286.1`	LRR_13	803	901	9.6e-09	35.9
LXL04_019415	`PF13855.13`	LRR_8	816	874	7.7e-12	45.5
LXL04_019415	`PF12799.14`	LRR_4	843	879	1.5e-15	57.6
LXL04_019415	`PF20160.5`	C-JID	1015	1139	3e-06	28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FI14`	Arabidopsis thaliana	Disease resistance protein TAO1	29.703%	Swiss-Prot	weak database homology

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